{"id":"W2752825565","doi":"10.1038/npre.2011.6430.1","title":"PrionOme: A database of prions and other sequences relevant to prion phenomena","year":2011,"lang":"en","type":"preprint","venue":"Nature Precedings","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; McGill University","funders":"Wellcome Trust","keywords":"Fungal prion; Pseudogene; Computational biology; Biology; Mendelian inheritance; Organism; Prion protein; Genetics; Database; Saccharomyces cerevisiae; Yeast; Genome; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00130907,0.002137348,0.001882006,0.01152649,0.0008296184,0.002981727,0.002138246,0.002402999,0.02834778],"category_scores_gemma":[0.007638717,0.0008778835,0.0009958469,0.01382932,0.0004810365,0.004222748,0.00279963,0.001970452,0.02597808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008609942,"about_ca_system_score_gemma":0.002512558,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003461143,"about_ca_topic_score_gemma":0.004799461,"domain_scores_codex":[0.9992543,0.0001088949,0.0002563901,0.0001322325,0.0001837461,0.00006441943],"domain_scores_gemma":[0.9965868,0.001160333,0.0005117765,0.0005818643,0.0005914888,0.0005677001],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001841393,0.0003483049,0.008752072,0.02288247,0.0003790696,0.002688313,0.001156725,0.002707359,0.0303788,0.01496113,0.7633047,0.1505998],"study_design_scores_gemma":[0.0004518413,0.0001899069,0.01376563,0.001951124,0.000204299,0.001834989,0.0003998767,0.003027828,0.005384422,0.009033538,0.9635642,0.0001923101],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"dataset","genre_scores_codex":[0.007751346,0.004101209,0.006817679,0.0003396019,0.000123667,0.0002510119,0.9611921,0.01233208,0.007091296],"genre_scores_gemma":[0.004554433,0.001896064,0.009621716,0.0001294972,0.00003105103,0.0001527667,0.98179,0.0007929244,0.001031582],"genre_candidate":"dataset","genre_consensus":"dataset","teacher_disagreement_score":0.02834778,"threshold_uncertainty_score":0.09483278,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01579292499198474,"score_gpt":0.2824255069230727,"score_spread":0.2666325819310879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}