{"id":"W2752825565","doi":"10.1038/npre.2011.6430.1","title":"PrionOme: A database of prions and other sequences relevant to prion phenomena","year":2011,"lang":"en","type":"preprint","venue":"Nature Precedings","topic":"Prion Diseases and Protein Misfolding","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; McGill University","funders":"Wellcome Trust","keywords":"Fungal prion; Pseudogene; Computational biology; Biology; Mendelian inheritance; Organism; Prion protein; Genetics; Database; Saccharomyces cerevisiae; Yeast; Genome; Gene; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.000346425,0.0003146198,0.0003134666,0.0001241648,0.00006652505,0.00004160756,0.0004582469,0.0007239438,0.00006124308],"category_scores_gemma":[0.000325218,0.0002912207,0.0001252793,0.00009535586,0.0000896545,0.000006646912,0.001466657,0.0006064776,0.000003626135],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002523598,"about_ca_system_score_gemma":0.0001720128,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007770761,"about_ca_topic_score_gemma":0.00002532984,"domain_scores_codex":[0.9983498,0.0000519055,0.0003319655,0.0007977845,0.0001942825,0.0002742316],"domain_scores_gemma":[0.9987219,0.00001748364,0.0002849104,0.0006131757,0.0001416459,0.0002208804],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0005754212,0.0001368258,0.003138744,0.001063087,0.0003070501,0.000003592377,0.001021031,0.00003339803,0.9527343,0.002144624,0.002603582,0.03623836],"study_design_scores_gemma":[0.001140072,0.0007838772,0.003546018,0.002440156,0.0003401775,0.00003315225,0.0002172074,0.00008858026,0.644285,0.006013335,0.3393295,0.001782929],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9360636,0.05804154,0.001021222,0.000452758,0.0005485063,0.001432727,0.0006496565,0.00004262524,0.001747376],"genre_scores_gemma":[0.9800743,0.006833398,0.01143568,0.000679761,0.0004458912,0.000124149,0.0001981484,0.00005510602,0.0001534954],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3367259,"threshold_uncertainty_score":0.999954,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01579292499198474,"score_gpt":0.2824255069230727,"score_spread":0.2666325819310879,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}