{"id":"W2752897813","doi":"10.1099/mic.0.000519","title":"The Rhodobacter capsulatus gene transfer agent is induced by nutrient depletion and the RNAP omega subunit","year":2017,"lang":"en","type":"article","venue":"Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canadian Institutes of Health Research","keywords":"Rhodobacter; Biology; Gene; Bacteriophage; Protein subunit; Horizontal gene transfer; Biochemistry; RNA polymerase; Bacteria; Microbiology; Cell biology; Escherichia coli; Genetics; Genome; Mutant","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000179316,0.0008520834,0.0003403223,0.0003399907,0.0001416152,0.0003371479,0.0002284381,0.0003219631,0.0006962403],"category_scores_gemma":[0.0002042082,0.0002328193,0.000293861,0.0001963335,0.0003154787,0.0002037554,0.0003861275,0.0004635599,0.0004191765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004058302,"about_ca_system_score_gemma":0.0002400741,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009073543,"about_ca_topic_score_gemma":0.0006946049,"domain_scores_codex":[0.9997455,0.00004432706,0.00001962583,0.00005093923,0.0000814235,0.00005811876],"domain_scores_gemma":[0.9996707,0.0000611995,0.0001137482,0.00005710931,0.00003429855,0.00006284702],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003260912,0.00001023316,0.00009800623,0.00000952939,0.000001574462,0.00002074443,0.000004690009,0.00001608122,0.9995298,0.00001937198,0.000007213028,0.0002501942],"study_design_scores_gemma":[0.000006152924,0.0001587393,0.002919203,0.000002908263,0.000005385215,0.00008748852,0.00001494923,0.0002531352,0.9960983,0.00002144117,0.0004294399,0.000002972342],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9964693,0.000715939,0.001421949,0.00006573796,0.00001617703,0.00002420787,0.0001924452,0.000140615,0.0009536563],"genre_scores_gemma":[0.9952697,0.0003694924,0.001707249,0.00003647824,0.000009459988,0.00003904064,0.0006023816,0.00004139396,0.001924624],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009073543,"threshold_uncertainty_score":0.002944529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01212615049206328,"score_gpt":0.2278825383996635,"score_spread":0.2157563879076002,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}