{"id":"W2753328444","doi":"10.1016/j.str.2017.07.016","title":"Cryoelectron Microscopy Reconstructions of the Pseudomonas aeruginosa and Neisseria gonorrhoeae Type IV Pili at Sub-nanometer Resolution","year":2017,"lang":"en","type":"article","venue":"Structure","topic":"Bacterial Infections and Vaccines","field":"Immunology and Microbiology","cited_by":114,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; British Columbia Knowledge Development Fund; National Center for Research Resources; National Institute of General Medical Sciences; Western Economic Diversification Canada; Canadian Institutes of Health Research; National Institutes of Health; Simon Fraser University; Agence Nationale de la Recherche; Fondation pour la Recherche Médicale; Canada Foundation for Innovation","keywords":"Pilus; Pilin; Neisseria gonorrhoeae; Fimbriae Proteins; Protein filament; Biophysics; Biology; Helix (gastropod); Neisseria; Pseudomonas aeruginosa; Microbiology; Crystallography; Chemistry; Escherichia coli; Bacteria; Biochemistry; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004627271,0.0001367698,0.000189346,0.00004291211,0.0009406342,0.00003520505,0.0001807604,0.0002276227,0.0005184414],"category_scores_gemma":[0.0000575591,0.00009470224,0.00006096726,0.00006324592,0.0003177877,0.0001076894,0.0001429101,0.0001953772,0.00001371783],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003306167,"about_ca_system_score_gemma":0.00003742431,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000159793,"about_ca_topic_score_gemma":0.0006214186,"domain_scores_codex":[0.9993466,0.00006755927,0.00017113,0.0002087796,0.000005776653,0.0002002271],"domain_scores_gemma":[0.9991783,0.00001805338,0.00020788,0.0005100751,0.00007130728,0.00001434243],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001196973,0.000007199581,0.0301904,0.000009656996,0.00005547857,2.683678e-8,0.00005484566,6.947163e-7,0.9666534,0.0002808371,0.001192554,0.001435229],"study_design_scores_gemma":[0.0006058729,0.0001139655,0.4164692,0.00002120351,0.0000638911,0.0002347336,0.00002313131,0.000001687754,0.5487484,0.0007616482,0.03281906,0.0001372389],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9952063,0.0007534949,0.000004035464,0.0002638336,0.00323137,0.0001560189,0.00009451403,0.00001840559,0.0002720583],"genre_scores_gemma":[0.9986046,0.0001172756,0.00007608865,0.00001713796,0.000076344,0.000003137208,0.00003118574,0.0000103021,0.001063953],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.417905,"threshold_uncertainty_score":0.7234693,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008882843007667363,"score_gpt":0.2405544236525072,"score_spread":0.2316715806448398,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}