{"id":"W2753820868","doi":"10.1097/olq.0000000000000707","title":"A Comparison of Real-Time Polymerase Chain Reaction Assays for the Detection of Antimicrobial Resistance Markers and Sequence Typing From Clinical Nucleic Acid Amplification Test Samples and Matched Neisseria gonorrhoeae Culture","year":2017,"lang":"en","type":"article","venue":"Sexually Transmitted Diseases","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Provincial Laboratory of Public Health; Queen Elizabeth II Health Sciences Centre; Université de Montréal; Ste. Anne's Hospital; BC Centre for Disease Control; Public Health Agency of Canada","funders":"","keywords":"Neisseria gonorrhoeae; Nucleic Acid Amplification Tests; Polymerase chain reaction; Typing; Neisseria; Microbiology; Nucleic acid; Medicine; Virology; Real-time polymerase chain reaction; Neisseriaceae; Biology; Genetics; Bacteria; Gene; Antibiotics; Chlamydia trachomatis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004191269,0.0001674861,0.0003865045,0.00006913769,0.0005985313,0.00005084409,0.0002083444,0.0001932814,0.0000162425],"category_scores_gemma":[0.001203979,0.000136221,0.00008254142,0.00008479374,0.0008907956,0.0002259023,0.00002959151,0.0002130376,0.00000289111],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002483033,"about_ca_system_score_gemma":0.00008257782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008853102,"about_ca_topic_score_gemma":0.0002538946,"domain_scores_codex":[0.9985613,0.0002654626,0.0004837605,0.0004629194,0.00003090093,0.0001956999],"domain_scores_gemma":[0.9975592,0.00116346,0.0004602464,0.0005713707,0.0002074427,0.00003820556],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001896466,0.000306688,0.06129219,0.0001112648,0.0002241829,1.058473e-7,0.0003531027,0.000001103366,0.9189913,0.0000325958,0.00008060387,0.01671043],"study_design_scores_gemma":[0.001257621,0.0002251885,0.8438278,0.00009613422,0.0002697154,0.000004191639,0.0005842955,0.00007583469,0.1529336,0.000130519,0.0004468699,0.0001481871],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9935625,0.002647506,0.001725943,0.0003480408,0.0001927112,0.000708813,0.0007435815,0.00004330669,0.00002756508],"genre_scores_gemma":[0.9983798,0.0009171416,0.000253573,0.00001041686,0.00005017635,0.00004570209,0.0002098927,0.00001922511,0.0001140255],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7825357,"threshold_uncertainty_score":0.5554933,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04984103000132388,"score_gpt":0.354849318094714,"score_spread":0.3050082880933901,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}