{"id":"W2754492686","doi":"10.3168/jds.2017-13363","title":"Short communication: Molecular epidemiology of Streptococcus agalactiae differs between countries","year":2017,"lang":"en","type":"article","venue":"Journal of Dairy Science","topic":"Neonatal and Maternal Infections","field":"Medicine","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Prince Edward Island","funders":"Atlantic Veterinary College; Universidad de Antioquia; Ministerio de Agricultura y Desarrollo Rural; Innovation PEI; Departamento Administrativo de Ciencia, Tecnología e Innovación (COLCIENCIAS)","keywords":"Streptococcus agalactiae; Multilocus sequence typing; Molecular epidemiology; Biology; Herd; Epidemiology; Biosecurity; Mastitis; Typing; Veterinary medicine; Microbiology; Streptococcus; Genetics; Medicine; Genotype; Animal science; Internal medicine; Gene; Bacteria; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001234283,0.00006562101,0.0003244837,0.0001213595,0.0002837215,0.00001685774,0.0005358864,0.00003638056,0.00002200968],"category_scores_gemma":[0.0008365854,0.00004634391,0.00009713025,0.00007292835,0.001312598,0.0004090184,0.0001270911,0.0002128996,0.000003300763],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004636115,"about_ca_system_score_gemma":0.0001824398,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003910589,"about_ca_topic_score_gemma":0.000001839538,"domain_scores_codex":[0.9990309,0.00004004574,0.0004199304,0.00008744345,0.0002758327,0.0001458796],"domain_scores_gemma":[0.9982914,0.0001628436,0.0005354102,0.0005005782,0.0003577568,0.0001520512],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002453275,0.00002777912,0.9916896,0.00001919933,0.00003064044,0.00001881037,0.00004240594,0.000006952093,0.005094382,0.0005599731,0.00009665083,0.002389106],"study_design_scores_gemma":[0.0002565848,0.0002359105,0.9806817,0.0001397664,0.00005614836,0.0001607313,0.00002990522,0.000009596178,0.01631718,0.001018949,0.001051962,0.00004155535],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944253,0.0003128674,0.0008938886,0.002412045,0.0001904369,0.00007532764,0.000006171686,0.000004420296,0.001679551],"genre_scores_gemma":[0.9985892,0.0001098381,0.001030256,0.0001239524,0.00006884621,9.427409e-7,5.946693e-7,0.000003265262,0.00007309347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0112228,"threshold_uncertainty_score":0.4836321,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05214904021796676,"score_gpt":0.3740547604293084,"score_spread":0.3219057202113416,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}