{"id":"W2755221674","doi":"10.1093/ofid/ofx163.870","title":"Molecular Investigation of an Ontario Mumps Outbreak using Whole Genome Sequencing","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario; Hospital for Sick Children; Toronto Public Health","funders":"","keywords":"Outbreak; Mumps virus; Genotyping; Genotype; Virology; Whole genome sequencing; Genome; Biology; Genetics; Gene; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009901149,0.0001753919,0.0003445541,0.00008774659,0.0005734002,0.0001499055,0.0003126619,0.00009512152,0.0001700984],"category_scores_gemma":[0.0001529921,0.0001672905,0.0001256104,0.00005023408,0.0002725507,0.0008673277,0.0002764859,0.0001220644,0.00002257769],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002336501,"about_ca_system_score_gemma":0.0007266522,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.02871711,"about_ca_topic_score_gemma":0.01011806,"domain_scores_codex":[0.9989494,0.00006337605,0.0002461919,0.0003141246,0.0001621597,0.0002647487],"domain_scores_gemma":[0.9985358,0.00001202255,0.0002743481,0.0007494668,0.0001073143,0.0003210782],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001866009,0.0001813854,0.936623,0.00005820719,0.000123719,0.0001062218,0.0001711341,0.000304285,0.06129971,0.0004597329,0.00003441389,0.0004515338],"study_design_scores_gemma":[0.001761415,0.0006141081,0.986432,0.0001270172,0.0005645191,0.00005923423,0.0001307732,0.00048486,0.004113202,0.005261704,0.0002261702,0.0002250102],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934528,0.0001192727,0.00006870915,0.0002000203,0.0001041831,0.0005839329,0.00008228222,0.0000452093,0.005343594],"genre_scores_gemma":[0.9983947,0.000002862589,0.0001559967,0.0009689499,0.00003996864,0.00002790551,0.000183003,0.00002702654,0.0001996299],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05718651,"threshold_uncertainty_score":0.9777507,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03608716962593505,"score_gpt":0.3120163391212254,"score_spread":0.2759291694952903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}