{"id":"W2755221674","doi":"10.1093/ofid/ofx163.870","title":"Molecular Investigation of an Ontario Mumps Outbreak using Whole Genome Sequencing","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Public Health Ontario; Hospital for Sick Children; Toronto Public Health","funders":"","keywords":"Outbreak; Mumps virus; Genotyping; Genotype; Virology; Whole genome sequencing; Genome; Biology; Genetics; Gene; Virus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001659405,0.0002763149,0.0002502767,0.001105031,0.0009277968,0.0004627182,0.000311176,0.0002430182,0.0008641824],"category_scores_gemma":[0.0004664193,0.0001668484,0.0003137758,0.001347673,0.0003715101,0.0001290454,0.0004373741,0.0002003723,0.0001322799],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004070702,"about_ca_system_score_gemma":0.003924646,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5840169,"about_ca_topic_score_gemma":0.7113771,"domain_scores_codex":[0.9996717,0.00001734401,0.00001102349,0.00007052987,0.0001292485,0.0001000053],"domain_scores_gemma":[0.9997477,0.00002401795,0.0000578849,0.00001356992,0.000110769,0.00004610077],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006929408,0.00008350068,0.5201713,0.000649514,0.0001712423,0.004156891,0.003954426,0.001685331,0.4292739,0.0005276871,0.00349013,0.03514313],"study_design_scores_gemma":[0.0000140535,0.00009911178,0.9728791,0.00003548738,0.00007085618,0.0007473537,0.001280163,0.001712804,0.0145401,0.00007967304,0.008525473,0.00001574384],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886096,0.0004916254,0.001835324,0.0001464443,0.00001076581,0.0001945239,0.005381298,0.00006290759,0.003267574],"genre_scores_gemma":[0.9829201,0.0006010334,0.006960543,0.000137848,0.00001059445,0.00007880115,0.007261967,0.00002239393,0.002006673],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4159831,"threshold_uncertainty_score":0.8368659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03608716962593505,"score_gpt":0.3120163391212254,"score_spread":0.2759291694952903,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}