{"id":"W2755223414","doi":"10.1128/genomea.00963-17","title":"Complete Genome Sequence of Mycobacterium chimaera SJ42, a Nonoutbreak Strain from an Immunocompromised Patient with Pulmonary Disease","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Mycobacterium research and diagnosis","field":"Medicine","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia Hospital; St. Paul's Hospital; Shared Health; BC Centre for Disease Control; Providence Health Care; BC Cancer Agency","funders":"National Institutes of Health; BC Cancer Foundation; Canada Research Chairs; Genome British Columbia; Genome Canada; National Human Genome Research Institute; Michael Smith Health Research BC; Cystic Fibrosis Foundation","keywords":"Whole genome sequencing; Mycobacterium; Biology; Nontuberculous mycobacteria; Opportunistic pathogen; Pulmonary disease; Chimera (genetics); Microbiology; Pneumonia; Disease; Virology; Genome; Gene; Genetics; Bacteria; Virulence; Medicine; Pathology; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002805004,0.0008488877,0.0008598398,0.001243369,0.0007574307,0.000739165,0.000459161,0.001035789,0.00192487],"category_scores_gemma":[0.0010919,0.0003254259,0.0007314779,0.002373216,0.000318509,0.0002898749,0.0005717856,0.001212494,0.001614779],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003509051,"about_ca_system_score_gemma":0.000864544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00628865,"about_ca_topic_score_gemma":0.006220815,"domain_scores_codex":[0.9996258,0.00003045106,0.00003750938,0.0001199468,0.0001293081,0.00005698444],"domain_scores_gemma":[0.9992532,0.0002144396,0.0001192699,0.00007429289,0.0002029729,0.0001357597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0012578,0.000167997,0.01181935,0.00196569,0.0001506082,0.004300854,0.000879562,0.0009290451,0.9425451,0.0004840078,0.01283395,0.0226662],"study_design_scores_gemma":[0.0003525752,0.001466418,0.4497619,0.0007883812,0.001113392,0.01602948,0.002741283,0.004525611,0.1978225,0.001700395,0.323339,0.0003591192],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.5226139,0.005648298,0.01232824,0.001589927,0.0007791273,0.0003082622,0.4508292,0.001031918,0.004871151],"genre_scores_gemma":[0.356127,0.003515316,0.03377617,0.0008228657,0.0002360666,0.0002307581,0.600995,0.0006475667,0.003649337],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00628865,"threshold_uncertainty_score":0.0125041,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04122696567257818,"score_gpt":0.2989189667711356,"score_spread":0.2576920010985574,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}