{"id":"W2756068404","doi":"10.1093/ofid/ofx163.1553","title":"Attenuated Total Reflectance Fourier Transform Infrared Spectroscopy for Rapid Identification of Non-Fermenting Gram-Negative Bacilli Isolated from Patients with Cystic Fibrosis","year":2017,"lang":"en","type":"article","venue":"Open Forum Infectious Diseases","topic":"Infections and bacterial resistance","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre; Université de Montréal; Centre Hospitalier Universitaire Sainte-Justine","funders":"","keywords":"Stenotrophomonas maltophilia; Microbiology; Burkholderia; Bacilli; Burkholderia cepacia complex; Stenotrophomonas; Achromobacter; Pseudomonas aeruginosa; Attenuated total reflection; Cystic fibrosis; Biology; Medicine; Pseudomonas; Chemistry; Bacteria; Infrared spectroscopy; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005787597,0.0002942039,0.0002801712,0.0006273827,0.0002014038,0.0002602718,0.0002265696,0.0003748953,0.0007413155],"category_scores_gemma":[0.0006471919,0.000113614,0.0001903821,0.0005329105,0.0001214454,0.0002736528,0.0002073085,0.0003123929,0.0003972608],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008928691,"about_ca_system_score_gemma":0.0002139475,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004116016,"about_ca_topic_score_gemma":0.0007369779,"domain_scores_codex":[0.999505,0.0002034821,0.00003102372,0.00005689557,0.0001731051,0.00003051075],"domain_scores_gemma":[0.9997558,0.00009143413,0.00006597477,0.00001503965,0.0000496924,0.00002195179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003898887,0.0002786432,0.01076836,0.0001823483,0.0000258243,0.0002049618,0.00005670356,0.0001702401,0.9525849,0.00004330729,0.0001671749,0.03512783],"study_design_scores_gemma":[0.00009222842,0.006600121,0.2805525,0.0001228342,0.0002463565,0.006181771,0.0004805959,0.01282613,0.6840318,0.0001445411,0.008666648,0.0000545383],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9731795,0.004859495,0.01984463,0.0001551378,0.00003764923,0.0001262613,0.0005534773,0.0001270016,0.001116823],"genre_scores_gemma":[0.941142,0.003888658,0.05261276,0.00008906117,0.00002444588,0.0001147317,0.0009982423,0.00001847769,0.001111477],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007413155,"threshold_uncertainty_score":0.003060818,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005196186792991119,"score_gpt":0.2566833167056846,"score_spread":0.2514871299126935,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}