{"id":"W2758188863","doi":"10.3389/fmicb.2017.01875","title":"DNA-Sequence Based Typing of the Cronobacter Genus Using MLST, CRISPR-cas Array and Capsular Profiling","year":2017,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Oxford; Trent University; University of Warwick; Wellcome Trust; Nottingham Trent University","keywords":"Multilocus sequence typing; Cronobacter; Biology; Genotyping; Typing; Genetics; Genotype; Microbiology; Enterobacter; Gene; Escherichia coli","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009150609,0.0006856449,0.001074647,0.002681473,0.0002662031,0.001051781,0.0005166031,0.0006369414,0.0008719848],"category_scores_gemma":[0.003076156,0.0003076073,0.0009034661,0.002597024,0.0003262992,0.0004687837,0.0007712936,0.0006648505,0.0005566687],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004118122,"about_ca_system_score_gemma":0.0004768081,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002107768,"about_ca_topic_score_gemma":0.003104941,"domain_scores_codex":[0.9982741,0.0002286894,0.0002761711,0.0004645881,0.0005993849,0.0001569478],"domain_scores_gemma":[0.9984509,0.000394215,0.000543652,0.0001333582,0.0003803637,0.00009742088],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000603605,0.0001434529,0.03583816,0.001150863,0.0001917374,0.0004938453,0.0003860247,0.001912751,0.8934886,0.0003598031,0.0006626577,0.06476852],"study_design_scores_gemma":[0.00005365943,0.001592138,0.1923942,0.0003539797,0.0006843294,0.003110309,0.0007583647,0.02174895,0.7580492,0.0005504282,0.02046058,0.000243806],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9160988,0.00620585,0.05844315,0.0003546468,0.0001740819,0.0007110208,0.01277183,0.0009791729,0.004261427],"genre_scores_gemma":[0.868536,0.002939316,0.113733,0.0002209789,0.00006133795,0.0003931138,0.01154809,0.0001403101,0.002427936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002681473,"threshold_uncertainty_score":0.004839361,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02358617407866385,"score_gpt":0.2887349073728205,"score_spread":0.2651487332941567,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}