{"id":"W2758677856","doi":"10.1093/gbe/evx207","title":"Pervasive Transcription of Mitochondrial, Plastid, and Nucleomorph Genomes across Diverse Plastid-Bearing Species","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Plastid; Genome; Genetics; Intergenic region; Transcription (linguistics); Organelle; Gene; RNA; Nuclear gene; Non-coding RNA; Computational biology; Mitochondrial DNA; Chloroplast","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002899764,0.0001674706,0.0002408952,0.0006428004,0.0003655287,0.0003989679,0.0001558022,0.0001854042,0.0005249195],"category_scores_gemma":[0.0004600859,0.0001554926,0.0002467499,0.0004442198,0.0002652908,0.0003021968,0.0004488852,0.0003509963,0.0002094393],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002199056,"about_ca_system_score_gemma":0.0001902748,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001002745,"about_ca_topic_score_gemma":0.002154389,"domain_scores_codex":[0.9997024,0.000021556,0.0000214379,0.0001751606,0.00005084821,0.00002847306],"domain_scores_gemma":[0.9996668,0.00008872474,0.00007952506,0.00005135087,0.00006139276,0.00005228274],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005385723,0.00001322007,0.01069492,0.00006489116,0.00001263739,0.00006123789,0.0002435068,0.0001281075,0.9828268,0.00016655,0.00003190147,0.005702256],"study_design_scores_gemma":[0.00001576446,0.000289212,0.691244,0.0000702676,0.0001390146,0.001286281,0.0007943852,0.00392213,0.2912996,0.0009781434,0.009917862,0.00004338922],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921526,0.0005797236,0.004429443,0.00004032815,0.000008870543,0.00001289078,0.001427122,0.0000986072,0.001250436],"genre_scores_gemma":[0.9922928,0.0003209373,0.004271633,0.00008072561,0.000006690381,0.00001426801,0.002354655,0.00004340308,0.0006148239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001002745,"threshold_uncertainty_score":0.001993775,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01902389678654699,"score_gpt":0.2491061630626162,"score_spread":0.2300822662760692,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}