{"id":"W2759397805","doi":"10.1534/g3.117.300290","title":"Pervasive, Genome-Wide Transcription in the Organelle Genomes of Diverse Plastid-Bearing Protists","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Organelle; Transcription (linguistics); Genetics; RNA; Gene; Plastid; Computational biology; Non-coding RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0003534904,0.0003501237,0.0003580681,0.00009527154,0.0005079969,0.00009850703,0.001206108,0.0001831015,0.00002736273],"category_scores_gemma":[0.00002267004,0.0003007839,0.0001875538,0.00009176641,0.0003383771,0.000003825088,0.0004296032,0.0001306894,0.00001313638],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000265075,"about_ca_system_score_gemma":0.0001182801,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000678179,"about_ca_topic_score_gemma":0.0003576245,"domain_scores_codex":[0.998068,0.00009938831,0.000481931,0.0005737705,0.0002716087,0.000505333],"domain_scores_gemma":[0.9981529,0.00003140464,0.000319953,0.00125287,0.000157412,0.0000854364],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007459133,0.0001073134,0.2461618,0.00008893202,0.0001449545,0.0000109548,0.001678038,0.001739511,0.6888273,0.00002551088,0.0001062352,0.06103484],"study_design_scores_gemma":[0.001607595,0.0006175462,0.7005983,0.00002360981,0.0001287429,0.00003301993,0.00216707,0.0001022478,0.09501288,0.0002126969,0.1987791,0.0007172397],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8453,0.1522499,0.0001606931,0.000154307,0.0002683006,0.0006739183,0.00007679783,0.000004149034,0.001111915],"genre_scores_gemma":[0.9069741,0.09089836,0.00125493,0.0001241947,0.000294459,0.00006497696,0.00004904759,0.00004501532,0.0002949595],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5938144,"threshold_uncertainty_score":0.9999444,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02418301102866835,"score_gpt":0.2429739290619097,"score_spread":0.2187909180332414,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}