{"id":"W2759869795","doi":"10.1101/192112","title":"Complete plastome sequences from <i>Bertholletia excelsa</i> and 23 related species yield informative markers for Lecythidaceae","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lakehead University","funders":"University of Michigan; National Science Foundation","keywords":"Chloroplast DNA; Biology; Phylogenetic tree; Polyphyly; Brazil nut; Evolutionary biology; Botany; Genetics; Clade; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188466,0.0003625771,0.0002074196,0.0007173567,0.0002265441,0.000377305,0.0002113605,0.0002210373,0.0009778375],"category_scores_gemma":[0.0003646191,0.0001643452,0.0002636163,0.0005594874,0.0001353675,0.0002114756,0.0002084911,0.0003247428,0.0005061465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000167634,"about_ca_system_score_gemma":0.0001680399,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006711265,"about_ca_topic_score_gemma":0.001207095,"domain_scores_codex":[0.999916,0.00000994009,0.000009902906,0.00003074008,0.00001879101,0.00001457412],"domain_scores_gemma":[0.9997543,0.00006867501,0.00008054875,0.00002417288,0.00003762725,0.00003471681],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001602193,0.00002897053,0.01055877,0.00006584849,0.00001833224,0.0001401528,0.0001117117,0.000208385,0.9811267,0.00007706739,0.00004698768,0.007456735],"study_design_scores_gemma":[0.00005830478,0.0004965022,0.5587958,0.0001087393,0.0002426745,0.002002844,0.0003826769,0.003755022,0.4200908,0.0005061397,0.01352737,0.00003313335],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937535,0.0004382791,0.003539824,0.00002770431,0.000007120817,0.00003585125,0.001250369,0.00005265979,0.0008946637],"genre_scores_gemma":[0.9709138,0.0003670457,0.01727864,0.0000368513,0.00001019517,0.00004639496,0.01023142,0.00003213057,0.001083522],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0009778375,"threshold_uncertainty_score":0.003271222,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02006331242656228,"score_gpt":0.2152457141912331,"score_spread":0.1951824017646708,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}