{"id":"W2760916513","doi":"10.1371/journal.pone.0185015","title":"Gene expression analysis of primordial shoot explants collected from mature white spruce (Picea glauca) trees that differ in their responsiveness to somatic embryogenesis induction","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant tissue culture and regeneration","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Natural Resources Canada; Canadian Forest Service","funders":"Canadian Forest Service; Natural Resources Canada; U.S. Forest Service","keywords":"Biology; Somatic embryogenesis; Callus; Explant culture; Gene; Gene expression; Genotype; Genetics; Microarray analysis techniques; Somatic cell; Transcriptome; Gene expression profiling; Microarray; Botany; Embryogenesis","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001545156,0.0003312998,0.0003830986,0.0004553869,0.0002435717,0.0003167116,0.0001386283,0.0002118538,0.0002800569],"category_scores_gemma":[0.0001807925,0.0001422976,0.0003324753,0.0004206017,0.0001973925,0.0001327605,0.0001831506,0.0004783013,0.0001726506],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000166895,"about_ca_system_score_gemma":0.0001704528,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001238344,"about_ca_topic_score_gemma":0.002416846,"domain_scores_codex":[0.999862,0.00001169996,0.00001180642,0.0000574833,0.00003262478,0.0000244178],"domain_scores_gemma":[0.999777,0.00007170066,0.00003344614,0.00001643204,0.00004773256,0.0000536511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001916214,0.000004147852,0.0007210317,0.00001159334,0.000002488124,0.00002842669,0.00004867509,0.00001428244,0.9988235,0.000005202969,0.0000034627,0.0003180487],"study_design_scores_gemma":[0.00001009298,0.0004264782,0.4493936,0.00001226675,0.0000786134,0.0005322529,0.0004999417,0.001672484,0.545801,0.0000565047,0.001496646,0.00002017866],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955695,0.0003357449,0.002131883,0.00002110648,0.000009936888,0.00002524858,0.001346446,0.00004964915,0.0005104599],"genre_scores_gemma":[0.9813175,0.0005312114,0.008178982,0.0001128014,0.00001735918,0.00009265751,0.006569384,0.00007115153,0.003108914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001238344,"threshold_uncertainty_score":0.002462268,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03718522148307999,"score_gpt":0.2413450595953885,"score_spread":0.2041598381123086,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}