{"id":"W2761208766","doi":"10.1002/ece3.3425","title":"Evolutionary structure of <i>Plasmodium falciparum</i> major variant surface antigen genes in South America: Implications for epidemic transmission and surveillance","year":2017,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Malaria Research and Control","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institutes of Health; York University","keywords":"Plasmodium falciparum; Malaria; Biology; Single-nucleotide polymorphism; Antigenic variation; Herd immunity; Population; Genetics; Gene; SNP; Evolutionary biology; Virology; Genotype; Immunology; Vaccination; Demography","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002833971,0.000106361,0.000124863,0.0007233187,0.0002954682,0.0003631756,0.0001546075,0.0001813119,0.0009327626],"category_scores_gemma":[0.00058976,0.00007841441,0.0001285068,0.0008559508,0.0003062726,0.0001721881,0.0003309727,0.0002371848,0.00007499383],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004257512,"about_ca_system_score_gemma":0.0003239979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01161536,"about_ca_topic_score_gemma":0.01151995,"domain_scores_codex":[0.999905,0.00002801526,0.000004930615,0.00003565019,0.00000907225,0.00001739779],"domain_scores_gemma":[0.9996731,0.00008449506,0.0001295284,0.00001740165,0.00005026234,0.0000451579],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002242576,0.00003141065,0.9451831,0.00005871024,0.00008079837,0.0002093647,0.002244245,0.0004459356,0.03978008,0.0004574114,0.0002208887,0.01106385],"study_design_scores_gemma":[0.000004036325,0.0000194582,0.9981427,0.000009997339,0.000009796131,0.0000991456,0.0005835464,0.0003775485,0.0002431544,0.0001201946,0.0003874081,0.000002968237],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992717,0.000156841,0.0001279447,0.00007225452,8.242736e-7,0.000003220963,0.00006736848,0.00000163975,0.0002982193],"genre_scores_gemma":[0.999575,0.0001060452,0.0001366442,0.00002663425,0.000001548579,0.000003213054,0.0001010974,0.000001531998,0.00004840819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01161536,"threshold_uncertainty_score":0.02309549,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0145204428784439,"score_gpt":0.2836265197916065,"score_spread":0.2691060769131626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}