{"id":"W2762092110","doi":"10.1101/198101","title":"The interface of malignant and immunologic clonal dynamics in high-grade serous ovarian cancer","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Cancer Immunotherapy and Biomarkers","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria; University of British Columbia; Canada's Michael Smith Genome Sciences Centre; Vancouver General Hospital; BC Cancer Agency; BC Children's Hospital","funders":"BC Cancer Foundation; Canada Research Chairs; Michael Smith Health Research BC; Genome British Columbia; Canadian Cancer Society Research Institute; Canadian Institutes of Health Research; Cancer Research Society; Genome Canada","keywords":"Serous fluid; Ovarian cancer; Biology; CD8; Immune system; Cytotoxic T cell; Transcriptome; Cancer research; Cancer; Immunohistochemistry; Gene expression profiling; Gene; Immunology; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001888897,0.0000754309,0.0001330693,0.000431048,0.0001364297,0.0004017841,0.00007245443,0.0001634903,0.0005957388],"category_scores_gemma":[0.0004262357,0.00008704444,0.00008267309,0.0002901285,0.0001913811,0.0001267164,0.000186183,0.0001732064,0.00009317951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001546328,"about_ca_system_score_gemma":0.00008614289,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003890284,"about_ca_topic_score_gemma":0.0005973778,"domain_scores_codex":[0.9999162,0.0000205165,0.000005677484,0.0000195796,0.0000215502,0.00001642189],"domain_scores_gemma":[0.9998005,0.00005357142,0.00007852261,0.00001837616,0.00002016497,0.00002884135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006700837,0.00002806094,0.7010083,0.00006896861,0.000046984,0.000413434,0.0003443956,0.0007369006,0.2762537,0.0002339599,0.0002172497,0.01997799],"study_design_scores_gemma":[0.00001422189,0.0001160386,0.9618411,0.000006601006,0.00003681071,0.001960596,0.0003912413,0.001946611,0.03237781,0.000297818,0.001006328,0.000004781942],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994248,0.0001939755,0.0001958143,0.00001266877,6.845291e-7,0.000001252227,0.00003468975,0.000005169736,0.0001309462],"genre_scores_gemma":[0.9997149,0.00003954964,0.0001428096,0.000007786198,0.000001659001,0.000001543582,0.00004271404,0.000001865948,0.00004706156],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005957388,"threshold_uncertainty_score":0.001993001,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01546026321643256,"score_gpt":0.2682839400726151,"score_spread":0.2528236768561825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}