{"id":"W2762917913","doi":"10.1093/sysbio/syx050","title":"Resolving Rapid Radiations within Angiosperm Families Using Anchored Phylogenomics","year":2017,"lang":"en","type":"article","venue":"Systematic Biology","topic":"Botany, Ecology, and Taxonomy Studies","field":"Agricultural and Biological Sciences","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; University of Ottawa","funders":"Division of Environmental Biology; Natural Sciences and Engineering Research Council of Canada; University of Ottawa; Division of Industrial Innovation and Partnerships; National Geographic Society; National Science Foundation","keywords":"Biology; Phylogenomics; Phylogenetic tree; Nuclear gene; NdhF; Phylogenetics; Evolutionary biology; Sanger sequencing; Clade; Genome; Genetics; Gene; DNA sequencing","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0006480507,0.0001870429,0.0005642119,0.0000189594,0.001349795,0.0001074655,0.0004827479,0.0001931538,0.00003954364],"category_scores_gemma":[0.0005997162,0.00007428793,0.000130295,0.00006607315,0.0003239881,0.00008724698,0.0002238056,0.0001080008,0.00002599224],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005313769,"about_ca_system_score_gemma":0.00001423541,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009239926,"about_ca_topic_score_gemma":0.001878634,"domain_scores_codex":[0.9985031,0.000233735,0.0005340802,0.0003352189,0.00005505352,0.0003387374],"domain_scores_gemma":[0.9986855,0.0003100927,0.0006333321,0.0002291806,0.00007738084,0.00006450665],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003717063,0.0001596311,0.7319229,0.002150312,0.0006695288,0.00001552727,0.0007093911,0.00004862705,0.2600029,0.003164015,0.0001850786,0.0009348671],"study_design_scores_gemma":[0.0004819471,0.0003779058,0.9822983,0.0007431223,0.0001972843,0.00005190193,0.006549798,0.003437121,0.0007895802,0.003953541,0.0004307974,0.000688693],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9955416,0.001529858,0.00003955819,0.0005918954,0.00073544,0.0006487885,0.00003991195,0.00005261605,0.0008203401],"genre_scores_gemma":[0.9984692,0.00006018152,0.0009109821,0.0001143683,0.0003303267,0.00006714023,0.000003691486,0.000001396416,0.00004272201],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2592134,"threshold_uncertainty_score":0.9999503,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06314131874042796,"score_gpt":0.2575245084731407,"score_spread":0.1943831897327128,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}