{"id":"W2763250708","doi":"10.1021/acs.jmedchem.7b00933","title":"Small Molecule Antagonists of the Interaction between the Histone Deacetylase 6 Zinc-Finger Domain and Ubiquitin","year":2017,"lang":"en","type":"article","venue":"Journal of Medicinal Chemistry","topic":"Histone Deacetylase Inhibitors Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":43,"is_retracted":false,"has_abstract":true,"ca_institutions":"Structural Genomics Consortium; University of Toronto","funders":"Structural Genomics Consortium; Diamond Light Source; Natural Sciences and Engineering Research Council of Canada; Government of Canada; Wellcome Trust","keywords":"Chemistry; HDAC6; Ubiquitin; Zinc finger; Small molecule; Histone deacetylase; RING finger domain; Ligand (biochemistry); Computational biology; Acetylation; Binding site; Binding domain; Histone; Biophysics; Cell biology; Biochemistry; Receptor; DNA; Biology; Transcription factor","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002236596,0.0004103,0.0004170459,0.000163763,0.000144089,0.0002876472,0.0004060968,0.0002630416,0.001789722],"category_scores_gemma":[0.000112538,0.0001521475,0.0002389703,0.0001533162,0.0002467706,0.0001633874,0.0001819154,0.0007836057,0.0004502469],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003967907,"about_ca_system_score_gemma":0.0002908291,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000449517,"about_ca_topic_score_gemma":0.001912343,"domain_scores_codex":[0.9998926,0.00001876892,0.000006464277,0.00001330915,0.0000341688,0.00003464101],"domain_scores_gemma":[0.9999428,0.00001562481,0.00001420189,0.000005104429,0.000005198799,0.00001700831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003300692,0.0002444392,0.0003131664,0.00008888148,0.00003158682,0.0001027979,0.00001907418,0.0008732191,0.98659,0.0009901901,0.0003191093,0.01009751],"study_design_scores_gemma":[0.0002743668,0.001626862,0.001261284,0.000007656391,0.00003925457,0.000218115,0.00001515562,0.002164288,0.9872252,0.0001387243,0.007017563,0.00001150615],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9719636,0.008882746,0.01229727,0.0004426915,0.0001182442,0.000312447,0.0005863974,0.0002072935,0.005189135],"genre_scores_gemma":[0.9841369,0.003567274,0.006530467,0.0001177835,0.00002443865,0.0001058743,0.0006341171,0.00001267017,0.004870481],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001789722,"threshold_uncertainty_score":0.005987227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02192232480933046,"score_gpt":0.317672498640149,"score_spread":0.2957501738308185,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}