{"id":"W2763298605","doi":"10.1016/j.jinf.2017.10.002","title":"Molecular epidemiology of multi- and extensively-drug-resistant Mycobacterium tuberculosis in Ireland, 2001–2014","year":2017,"lang":"en","type":"article","venue":"Journal of Infection","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":19,"is_retracted":false,"has_abstract":false,"ca_institutions":"Trinity College","funders":"","keywords":"Genotyping; Tuberculosis; Mycobacterium tuberculosis; rpoB; Mycobacterium tuberculosis complex; Biology; Rifampicin; Isoniazid; Drug resistance; Genotype; Molecular epidemiology; Variable number tandem repeat; Virology; Medicine; Genetics; Antibiotics; Gene; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001423151,0.0003295238,0.0004331155,0.002801407,0.0003162861,0.0010732,0.001556352,0.000880529,0.001163426],"category_scores_gemma":[0.003300856,0.000566725,0.0007017165,0.002415484,0.0006327674,0.0008847459,0.001192702,0.0009404249,0.0002666861],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002895334,"about_ca_system_score_gemma":0.002677264,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1256893,"about_ca_topic_score_gemma":0.1186444,"domain_scores_codex":[0.9984779,0.0002242384,0.0002899677,0.0002746402,0.0002437839,0.0004895029],"domain_scores_gemma":[0.9963703,0.0002632448,0.001766683,0.0001563762,0.0008642306,0.0005791699],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003387161,0.00004859186,0.9919428,0.0001032041,0.00006661537,0.0002274812,0.000301145,0.0003135803,0.000950308,0.00007763795,0.001074856,0.004555054],"study_design_scores_gemma":[0.000002647192,0.00003581993,0.9986098,0.00003204808,0.00001285219,0.0002042579,0.0003983598,0.00008390943,0.00007893996,0.0000044466,0.000532347,0.000004677004],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938069,0.0009106803,0.0001995582,0.0003988692,0.00004264838,0.00003038939,0.003521745,0.00001724043,0.001071972],"genre_scores_gemma":[0.9961553,0.0004492505,0.0001828397,0.0001246711,0.00002376571,0.00002373572,0.002308382,0.000008945675,0.0007231273],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1256893,"threshold_uncertainty_score":0.2499155,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04041630146790518,"score_gpt":0.3611458507244298,"score_spread":0.3207295492565246,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}