{"id":"W2763378576","doi":"10.3390/vetsci4040057","title":"Genomic Analysis of Third Generation Cephalosporin Resistant Escherichia coli from Dairy Cow Manure","year":2017,"lang":"en","type":"article","venue":"Veterinary Sciences","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; Agriculture and Agri-Food Canada","funders":"Government of Canada","keywords":"Ceftiofur; Microbiology; Biology; Cefotaxime; Ampicillin; Cephalosporin; Cefoxitin; Escherichia coli; Antibiotic resistance; Tetracycline; Pathogenic Escherichia coli; Clavulanic acid; Multiple drug resistance; Amoxicillin; Antibiotics; Bacteria; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003079299,0.0001359075,0.0002332906,0.00007286172,0.0004119185,0.0001293844,0.0007321676,0.000101086,0.0000592318],"category_scores_gemma":[0.00006077139,0.0001210356,0.0001190778,0.0001376702,0.0005940938,0.0000205692,0.0002050608,0.00004275339,0.000005047023],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001375985,"about_ca_system_score_gemma":0.00008132713,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003174468,"about_ca_topic_score_gemma":0.0002811154,"domain_scores_codex":[0.99882,0.0000648128,0.0002577234,0.000474825,0.0001904925,0.0001921261],"domain_scores_gemma":[0.9988157,0.0000112692,0.0003368173,0.0007317132,0.0000517357,0.00005275171],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009585563,0.00002406122,0.08434962,0.000005811663,0.0001392063,0.000007866145,0.00004206888,0.00007375495,0.9148558,0.00004708548,0.0001882884,0.0001705785],"study_design_scores_gemma":[0.0001541431,0.0005518841,0.9275095,0.00001274983,0.0001261829,0.000001196355,0.0001075543,0.001002538,0.06768975,0.00003685995,0.002627882,0.0001797062],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9975607,0.0003451501,0.0002619842,0.00007790158,0.0003282552,0.00009363836,0.0001062414,0.000006702189,0.001219401],"genre_scores_gemma":[0.9942341,0.0001607915,0.004941895,0.00004374444,0.000179396,0.000002888537,0.0001121909,0.00000732713,0.0003176084],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8471661,"threshold_uncertainty_score":0.493569,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04180216057645109,"score_gpt":0.300634696459695,"score_spread":0.258832535883244,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}