{"id":"W2763728961","doi":"10.1007/s00253-017-8574-0","title":"Genomic analyses reveal low mitochondrial and high nuclear diversity in the cyclosporin-producing fungus Tolypocladium inflatum","year":2017,"lang":"en","type":"article","venue":"Applied Microbiology and Biotechnology","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":41,"is_retracted":false,"has_abstract":false,"ca_institutions":"McMaster University","funders":"National Natural Science Foundation of China; U.S. Department of Agriculture","keywords":"Biology; Mitochondrial DNA; Genome; Nuclear DNA; Nuclear gene; Phylogenetic tree; Genetics; Gene; Phylogenetics; Intron; Hypocreales; Evolutionary biology; Ascomycota","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006516965,0.0001527321,0.0001730768,0.0004422659,0.0002352699,0.0004223685,0.0001408182,0.0002782346,0.0005740602],"category_scores_gemma":[0.0002112092,0.0001472296,0.0001429478,0.0004769751,0.0002490389,0.0001283977,0.0002419492,0.0003427046,0.0001846676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001942822,"about_ca_system_score_gemma":0.0001365141,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000977465,"about_ca_topic_score_gemma":0.002067742,"domain_scores_codex":[0.9998901,0.000009473373,0.000009301365,0.00004796435,0.00002317941,0.00002002608],"domain_scores_gemma":[0.9997042,0.00007252872,0.0001057233,0.00002922168,0.00002296072,0.00006529674],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001117254,0.000005221285,0.005554006,0.00001910599,0.000007721418,0.00003509354,0.00004458783,0.00004048497,0.9932467,0.00002668317,0.000006654139,0.0009020024],"study_design_scores_gemma":[0.00003079298,0.0002521471,0.8111216,0.00001776036,0.00009220358,0.0009906496,0.0005606245,0.0006693163,0.1845231,0.0002466106,0.001480277,0.00001484715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987884,0.0001078607,0.0004389803,0.000016344,0.000001559703,0.000001645913,0.0004289195,0.00001211227,0.0002042329],"genre_scores_gemma":[0.9985498,0.00007167694,0.0002182731,0.00001586672,0.000001868084,0.00000255291,0.0008914071,0.000006409837,0.0002420809],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000977465,"threshold_uncertainty_score":0.001943529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01183527381716035,"score_gpt":0.2247406050213712,"score_spread":0.2129053312042108,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}