{"id":"W2764047600","doi":"10.1093/mmy/myx081","title":"Transcriptional profile of the human skin pathogenic fungus Mucor irregularis in response to low oxygen","year":2017,"lang":"en","type":"article","venue":"Medical Mycology","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"National Key Research and Development Program of China; National Natural Science Foundation of China","keywords":"Biology; Rhizophagus irregularis; Transcriptome; Microbiology; Fungal protein; Mucor; Cell biology; Gene expression; Gene; Biochemistry; Genetics; Symbiosis; Aspergillus","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008604581,0.0001162744,0.000248232,0.00006235315,0.0001782391,0.000008297249,0.0006275637,0.0002323293,0.0003290568],"category_scores_gemma":[0.00125574,0.00008510002,0.0001170177,0.00006091638,0.000291461,0.000001876193,0.0003267564,0.0001482794,0.000007187455],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001658106,"about_ca_system_score_gemma":0.0001451542,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004295489,"about_ca_topic_score_gemma":0.0003913116,"domain_scores_codex":[0.9987029,0.0002267497,0.0002717911,0.000303647,0.0002277783,0.000267131],"domain_scores_gemma":[0.9991518,0.00003256837,0.0001046433,0.000555968,0.00005152185,0.0001034635],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003396098,0.000130556,0.005873261,0.00001297463,0.0000446389,0.0000124269,0.00005948952,0.000001133103,0.9891827,0.001136997,0.001877813,0.001328379],"study_design_scores_gemma":[0.001083922,0.0003658135,0.8986215,0.000014019,0.00001556436,0.00001469432,0.00003505455,0.00001190018,0.04856639,0.0002463383,0.05090182,0.0001229583],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932653,0.0003427052,0.00009818237,0.004988309,0.0003689108,0.0002604587,0.00004117446,0.000002984843,0.0006320188],"genre_scores_gemma":[0.9976792,0.00007336413,0.0002115907,0.0005615111,0.0001598025,0.00007239733,0.00001281816,0.00001100181,0.001218284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9406163,"threshold_uncertainty_score":0.3602941,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00944288361844319,"score_gpt":0.2730765349125538,"score_spread":0.2636336512941106,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}