{"id":"W2765154940","doi":"10.1128/aem.01738-17","title":"Interactions of the Hindgut Mucosa-Associated Microbiome with Its Host Regulate Shedding of Escherichia coli O157:H7 by Cattle","year":2017,"lang":"en","type":"article","venue":"Applied and Environmental Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; University of Lethbridge; University of Alberta","funders":"Alberta Innovates; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; Government of Canada","keywords":"Hindgut; Microbiome; Escherichia coli; Biology; Host (biology); Microbiology; Bacteria; Enterobacteriaceae; Genetics; Ecology; Gene; Midgut","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000198494,0.0001631066,0.0002691474,0.0002544396,0.000238273,0.000691048,0.00008678278,0.000237549,0.0007646209],"category_scores_gemma":[0.0002206224,0.0001232981,0.0001598961,0.0001857114,0.0002049428,0.0002272426,0.0002682505,0.000280478,0.0001601149],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002570447,"about_ca_system_score_gemma":0.0001792714,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001509111,"about_ca_topic_score_gemma":0.002102125,"domain_scores_codex":[0.999795,0.000045712,0.00000757056,0.00004886608,0.00003082916,0.00007191177],"domain_scores_gemma":[0.9998167,0.00002862548,0.00006297963,0.000006302574,0.00002528692,0.00006017323],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009215566,0.0001375057,0.1487073,0.00009264984,0.00005220891,0.0001507986,0.0004455229,0.0001665254,0.8434579,0.00007208232,0.0001301111,0.005665859],"study_design_scores_gemma":[0.000005472523,0.0003734959,0.9793419,0.0000135032,0.00003006434,0.0001501357,0.001074904,0.001517547,0.01687497,0.00005876131,0.0005519246,0.000007285651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994692,0.0001626157,0.0001145603,0.00001279645,0.00000159305,0.000002137294,0.00008756644,0.000002499284,0.0001471919],"genre_scores_gemma":[0.9990454,0.0001235904,0.0002741251,0.00002586974,0.000002756093,0.000005091528,0.0001898409,0.000002309669,0.0003309556],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001509111,"threshold_uncertainty_score":0.003000677,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004352388201094103,"score_gpt":0.2027979718209734,"score_spread":0.1984455836198794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}