{"id":"W2765217010","doi":"10.1111/1462-2920.13959","title":"Comprehensive functional characterization of the glycoside hydrolase family 3 enzymes from <i>Cellvibrio japonicus</i> reveals unique metabolic roles in biomass saccharification","year":2017,"lang":"en","type":"article","venue":"Environmental Microbiology","topic":"Biofuel production and bioconversion","field":"Engineering","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"British Columbia Knowledge Development Fund; National Institute of General Medical Sciences; Natural Sciences and Engineering Research Council of Canada; Canada Foundation for Innovation","keywords":"Biology; Glycoside hydrolase; Biochemistry; Metabolic pathway; Xyloglucan; Glucan; Cellulosome; Enzyme; Polysaccharide; Metagenomics; Genome; Computational biology; Gene; Cellulase; Clostridium thermocellum","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006215172,0.0001423238,0.0001784663,0.00004998732,0.0001130634,0.00001399562,0.000218848,0.0001563675,0.0001057563],"category_scores_gemma":[0.000004529143,0.0001177261,0.00006171164,0.00003251046,0.0002095846,0.0001265656,0.00009415895,0.0001360528,0.00005812285],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005817558,"about_ca_system_score_gemma":0.000006510366,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007260875,"about_ca_topic_score_gemma":0.000007896263,"domain_scores_codex":[0.9992442,0.00008315535,0.0002646636,0.0002298458,0.00004148303,0.0001366646],"domain_scores_gemma":[0.9994565,0.00001661068,0.0001611441,0.0003371353,0.000004782807,0.00002388281],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002387522,0.00003561638,0.008976525,0.00001144862,0.0000236687,4.229487e-7,0.00006323472,0.00003668015,0.9902973,0.00001323673,0.0001084799,0.0004095686],"study_design_scores_gemma":[0.0002616931,0.00000722609,0.3650331,0.00000881865,0.000008932983,0.000004093215,0.00002977499,0.0000848679,0.6223052,0.00002175697,0.01215488,0.00007960068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9976153,0.0009010659,0.0001056154,0.0002316214,0.0005333197,0.0002289686,0.0003220676,0.00002478561,0.00003729179],"genre_scores_gemma":[0.9986794,0.0005312206,0.00005644852,0.0001323435,0.0000678984,0.00001131944,0.0004198722,0.00001407965,0.00008744386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.367992,"threshold_uncertainty_score":0.4800729,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009384553371563036,"score_gpt":0.1754766576372731,"score_spread":0.1660921042657101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}