{"id":"W2765399518","doi":"10.1371/journal.pone.0186788","title":"Chloroplast genomes of Lilium lancifolium, L. amabile, L. callosum, and L. philadelphicum: Molecular characterization and their use in phylogenetic analysis in the genus Lilium and other allied genera in the order Liliales","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"Laurentian University","funders":"National Research Foundation of Korea; Rural Development Administration; National Research Foundation","keywords":"Biology; Genome; Genetics; Indel; Phylogenetic tree; Pseudogene; Genus; Evolutionary biology; Gene; Botany; Single-nucleotide polymorphism; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001240062,0.0002324083,0.0001881781,0.0005862042,0.0002092704,0.0002598865,0.0001789872,0.0002986948,0.000362913],"category_scores_gemma":[0.000371618,0.0001272849,0.0002772067,0.000333877,0.0001096178,0.0002643147,0.0002459117,0.0002560611,0.0001396148],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000435848,"about_ca_system_score_gemma":0.0002425899,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001672931,"about_ca_topic_score_gemma":0.003092806,"domain_scores_codex":[0.9999372,0.00000734707,0.00000708057,0.00002415743,0.00001147127,0.00001288114],"domain_scores_gemma":[0.9997687,0.0000508479,0.00007855719,0.00002070294,0.00003210903,0.00004919688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000227303,0.00001663293,0.0113777,0.00009666246,0.000010615,0.00007813056,0.000172503,0.000075233,0.9831822,0.00006114387,0.00003802829,0.004663805],"study_design_scores_gemma":[0.0000593592,0.0003895441,0.9214978,0.00006274498,0.0001270243,0.001212581,0.0003229233,0.002139108,0.06846979,0.0001844163,0.00550242,0.00003222306],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980462,0.0004988681,0.0005189676,0.00002362249,0.000002429894,0.000007691878,0.0007036526,0.00001877083,0.0001798988],"genre_scores_gemma":[0.9909953,0.0002971102,0.002630253,0.00005258545,0.000005859149,0.00003804382,0.005478686,0.00001193449,0.0004901641],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001672931,"threshold_uncertainty_score":0.003326356,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02692021557972012,"score_gpt":0.2190789586769807,"score_spread":0.1921587430972606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}