{"id":"W2765681392","doi":"10.1177/0748730417728663","title":"Guidelines for Genome-Scale Analysis of Biological Rhythms","year":2017,"lang":"en","type":"article","venue":"Journal of Biological Rhythms","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":303,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Douglas Mental Health University Institute; University of Guelph","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Environmental Health Sciences; National Institute of Neurological Disorders and Stroke; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute on Aging; National Key Research and Development Program of China; Leibniz-Gemeinschaft; Medical Research Council; University of California, San Diego; Washington University in St. Louis; Japan Society for the Promotion of Science; Directorate for Biological Sciences; Volkswagen Foundation; National Institutes of Health; Leibniz-Institut für Nutztierbiologie; Ministerio de Economía y Competitividad; National Natural Science Foundation of China; Cancer Research UK; Wellcome Trust; Biotechnology and Biological Sciences Research Council; Rensselaer Polytechnic Institute; National Institute of General Medical Sciences; Francis Crick Institute; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; National Science Foundation; Defense Advanced Research Projects Agency; University of Central Florida; Deutsche Forschungsgemeinschaft; European Bioinformatics Institute; Heart and Stroke Foundation of Canada","keywords":"Genome; Scale (ratio); Biological data; Computational biology; Computer science; Benchmark (surveying); Data science; Biology; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001150077,0.0002576601,0.001115697,0.000307861,0.0003430917,0.00008660963,0.0006938041,0.0003267991,0.0002003512],"category_scores_gemma":[0.007284128,0.0001526379,0.001107451,0.0002643574,0.000600977,0.0001946629,0.0001733519,0.0002866438,0.00001451565],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004322046,"about_ca_system_score_gemma":0.0000682806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000005099114,"about_ca_topic_score_gemma":0.00000227634,"domain_scores_codex":[0.9973265,0.0001391389,0.001293449,0.0004408703,0.0003189308,0.000481105],"domain_scores_gemma":[0.9961959,0.0006386719,0.001758211,0.0005683457,0.0005513082,0.0002875823],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001025854,0.0004791868,0.02920546,0.0000322138,0.0005705704,0.0003975191,0.000168202,0.0007432064,0.9167287,0.03136569,0.0007362085,0.01854715],"study_design_scores_gemma":[0.003116839,0.003425168,0.6474027,0.0001068835,0.0008089282,0.001183222,0.000115927,0.002641194,0.263562,0.01140088,0.06534131,0.0008949795],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908452,0.000682554,0.005149663,0.001756014,0.0006080002,0.000230333,0.0001609205,0.00002043772,0.0005468475],"genre_scores_gemma":[0.9915621,0.000863542,0.005659178,0.0007414317,0.00083006,0.000009560013,0.000005423984,0.00001223046,0.0003164569],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6531668,"threshold_uncertainty_score":0.8720308,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.221133506613885,"score_gpt":0.3853584318274789,"score_spread":0.1642249252135939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}