{"id":"W2765681392","doi":"10.1177/0748730417728663","title":"Guidelines for Genome-Scale Analysis of Biological Rhythms","year":2017,"lang":"en","type":"article","venue":"Journal of Biological Rhythms","topic":"Circadian rhythm and melatonin","field":"Neuroscience","cited_by":303,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; Douglas Mental Health University Institute; University of Guelph","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute of Environmental Health Sciences; National Institute of Neurological Disorders and Stroke; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute of Allergy and Infectious Diseases; National Institute on Aging; National Key Research and Development Program of China; Leibniz-Gemeinschaft; Medical Research Council; University of California, San Diego; Washington University in St. Louis; Japan Society for the Promotion of Science; Directorate for Biological Sciences; Volkswagen Foundation; National Institutes of Health; Leibniz-Institut für Nutztierbiologie; Ministerio de Economía y Competitividad; National Natural Science Foundation of China; Cancer Research UK; Wellcome Trust; Biotechnology and Biological Sciences Research Council; Rensselaer Polytechnic Institute; National Institute of General Medical Sciences; Francis Crick Institute; National Institute of Biomedical Imaging and Bioengineering; Canadian Institutes of Health Research; National Science Foundation; Defense Advanced Research Projects Agency; University of Central Florida; Deutsche Forschungsgemeinschaft; European Bioinformatics Institute; Heart and Stroke Foundation of Canada","keywords":"Genome; Scale (ratio); Biological data; Computational biology; Computer science; Benchmark (surveying); Data science; Biology; Bioinformatics; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.02381904,0.00274497,0.001681379,0.007401385,0.001792241,0.004243622,0.005887456,0.005109195,0.03683074],"category_scores_gemma":[0.06765875,0.002217196,0.003252943,0.007288747,0.002010995,0.002608976,0.003009247,0.006687711,0.03119721],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001802763,"about_ca_system_score_gemma":0.006144979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005257818,"about_ca_topic_score_gemma":0.008649435,"domain_scores_codex":[0.9847558,0.007757143,0.002866348,0.001063602,0.003137132,0.000419897],"domain_scores_gemma":[0.9305201,0.03271759,0.003763809,0.01344583,0.01768546,0.001867166],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0005566405,0.0003589882,0.003566097,0.006076253,0.0002664725,0.001774994,0.002107145,0.008159044,0.02455574,0.1069787,0.6184312,0.2271688],"study_design_scores_gemma":[0.0001619576,0.0001333099,0.003183429,0.001920095,0.00008398957,0.000616658,0.0003061197,0.004214624,0.006535291,0.06135695,0.921369,0.0001185085],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.002705655,0.005244866,0.862315,0.01039082,0.002968635,0.005360254,0.04400752,0.0196631,0.04734403],"genre_scores_gemma":[0.006855832,0.003674078,0.9350928,0.003934712,0.0005182655,0.01174505,0.02449102,0.004168113,0.009520138],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.03683074,"threshold_uncertainty_score":0.1259686,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.221133506613885,"score_gpt":0.3853584318274789,"score_spread":0.1642249252135939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}