{"id":"W2765867807","doi":"10.1101/209916","title":"Robustness encoded across essential and accessory replicons in an ecologically versatile bacterium","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Legume Nitrogen Fixing Symbiosis","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Extrachromosomal DNA; Replicon; Genome; Genetics; Sinorhizobium meliloti; In silico; Transposable element; Gene; Computational biology; Epistasis; Mutant","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002090142,0.0003914902,0.000269054,0.000430425,0.0002349393,0.0005533777,0.0001460349,0.0002509486,0.0005343245],"category_scores_gemma":[0.0003827446,0.0001777709,0.0004157741,0.000358404,0.0001991947,0.0002604915,0.0004154144,0.0002688768,0.0001607525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003345588,"about_ca_system_score_gemma":0.0002727188,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001491612,"about_ca_topic_score_gemma":0.002077208,"domain_scores_codex":[0.9998847,0.00002134117,0.000007483816,0.00004016833,0.00002832244,0.00001789009],"domain_scores_gemma":[0.9998506,0.00004360003,0.00004360414,0.00002180859,0.00001534093,0.00002498532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002507737,0.00003336947,0.009699033,0.000134619,0.00004870653,0.0001898982,0.00005281521,0.01589546,0.9653954,0.0006420921,0.00008254431,0.007575394],"study_design_scores_gemma":[0.00005945655,0.0008201613,0.1436627,0.00007088613,0.0003262152,0.001090193,0.0004253832,0.4063079,0.4332034,0.007097934,0.006830412,0.0001053304],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9899253,0.0002338546,0.008301967,0.00005366855,0.000004954598,0.0000091794,0.0007998997,0.0001643342,0.0005068921],"genre_scores_gemma":[0.9902723,0.0001474258,0.00828134,0.00001526079,0.000002380143,0.00001058124,0.001046438,0.00003363202,0.0001905375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001491612,"threshold_uncertainty_score":0.002965868,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02196608174497947,"score_gpt":0.2463370597026001,"score_spread":0.2243709779576206,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}