{"id":"W2766119520","doi":"10.1101/198473","title":"A helicase-containing module defines a family of pCD630-like plasmids in <i>Clostridium difficile</i>","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Leids Universitair Medisch Centrum; Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Wellcome Trust","keywords":"Plasmid; Replicon; Biology; Genetics; Clostridium difficile; Genome; In silico; T-DNA Binary system; Microbiology; Gene; Recombinant DNA; Vector (molecular biology)","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000123665,0.0002617709,0.0002367772,0.0005746344,0.0002295555,0.0003621146,0.0001666638,0.0002792724,0.001072745],"category_scores_gemma":[0.0004557449,0.0001198521,0.000341885,0.0006196006,0.0002133645,0.00018369,0.0002917704,0.0003267017,0.0004704789],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000200711,"about_ca_system_score_gemma":0.0001878737,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006312579,"about_ca_topic_score_gemma":0.0003379451,"domain_scores_codex":[0.9998803,0.00001628702,0.000008344561,0.00004013549,0.000028672,0.0000261437],"domain_scores_gemma":[0.99962,0.00008846197,0.0001530551,0.00003469434,0.0000395489,0.00006434597],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00039585,0.00007774897,0.01305995,0.0001078292,0.00001546072,0.0003224164,0.00008619053,0.0003128229,0.9771364,0.0003498749,0.000183753,0.007951668],"study_design_scores_gemma":[0.00008124273,0.001137203,0.2955294,0.00006359725,0.00008289133,0.004737751,0.0003176011,0.007333586,0.6778175,0.00117194,0.01168332,0.00004395596],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9922565,0.0003444816,0.005267018,0.00003300357,0.000009270362,0.00004646728,0.0009426655,0.0001178686,0.0009826776],"genre_scores_gemma":[0.9882128,0.0001044901,0.00822957,0.00004040552,0.000006686073,0.00002750904,0.002601314,0.00002814786,0.0007491419],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001072745,"threshold_uncertainty_score":0.003588676,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03109969632509401,"score_gpt":0.270276623091694,"score_spread":0.2391769267666,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}