{"id":"W2766233619","doi":"10.3390/life7040042","title":"SMORE: Synteny Modulator of Repetitive Elements","year":2017,"lang":"en","type":"article","venue":"Life","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Deutsche Forschungsgemeinschaft","keywords":"Synteny; Biology; Genome; Gene; Computational biology; Genetics; Evolutionary biology; Ribosomal RNA; Phylogenetics; Comparative genomics; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0000732677,0.00007207452,0.0001039813,0.000008783096,0.0001092587,0.00001135631,0.000196233,0.0000449591,0.00001124558],"category_scores_gemma":[0.0001813401,0.00006656518,0.00005476009,0.0000069258,0.00008432186,3.635676e-7,0.0001856471,0.00002189516,0.000004665766],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002219636,"about_ca_system_score_gemma":0.00002630301,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002899611,"about_ca_topic_score_gemma":0.00001231239,"domain_scores_codex":[0.9995174,0.000009433789,0.0001337008,0.0001678948,0.00005998448,0.0001115305],"domain_scores_gemma":[0.9992796,0.000003133491,0.0001356158,0.0004734494,0.00006270059,0.00004547976],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004614826,0.00004350592,0.1629362,0.00001664764,0.0001898368,0.00000142035,0.00004955434,0.000008863341,0.8325983,0.0005620089,0.001936026,0.00161147],"study_design_scores_gemma":[0.0006062642,0.000233817,0.6126817,0.0000149024,0.0000300212,0.000001883891,0.00009212326,0.00003098406,0.3436281,0.0003164789,0.04217179,0.000191876],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938812,0.0004610656,0.00005031402,0.0001511528,0.0001686375,0.00007275221,0.00003833523,0.000001015789,0.00517552],"genre_scores_gemma":[0.9983496,0.0001924735,0.000557234,0.0001444863,0.0001618966,0.000007640242,0.000007452841,0.000008602566,0.0005706003],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4889702,"threshold_uncertainty_score":0.2714449,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496468750282019,"score_gpt":0.2600325487446614,"score_spread":0.2450678612418412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}