{"id":"W2766233619","doi":"10.3390/life7040042","title":"SMORE: Synteny Modulator of Repetitive Elements","year":2017,"lang":"en","type":"article","venue":"Life","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Alberta","funders":"Deutsche Forschungsgemeinschaft","keywords":"Synteny; Biology; Genome; Gene; Computational biology; Genetics; Evolutionary biology; Ribosomal RNA; Phylogenetics; Comparative genomics; Genomics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008201962,0.001080856,0.0009487004,0.001667182,0.0007642621,0.001125607,0.001040613,0.0009233631,0.01424281],"category_scores_gemma":[0.001629611,0.0007587557,0.0009634744,0.0008397483,0.0003996388,0.001518721,0.001671955,0.0009514536,0.008322691],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003633285,"about_ca_system_score_gemma":0.000480341,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006084327,"about_ca_topic_score_gemma":0.00136869,"domain_scores_codex":[0.9992946,0.00008467349,0.00003935186,0.0003040008,0.0001912771,0.00008601666],"domain_scores_gemma":[0.9995555,0.0001749085,0.00008498484,0.00006371472,0.00004245133,0.0000784343],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.004025577,0.0002414819,0.02492692,0.002378037,0.0003812127,0.00154018,0.0009633177,0.00457781,0.5198537,0.01207292,0.09590786,0.333131],"study_design_scores_gemma":[0.0008578782,0.001157691,0.04421171,0.000272239,0.0003276684,0.00324683,0.000417814,0.1410235,0.4917594,0.01934486,0.2969888,0.0003915892],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.1494439,0.004366866,0.4093311,0.0008193167,0.0004969876,0.0005059727,0.0323743,0.3857221,0.01693941],"genre_scores_gemma":[0.4716295,0.001437074,0.4276187,0.0009837436,0.0002745615,0.0009588387,0.06139896,0.01801817,0.01768058],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.01424281,"threshold_uncertainty_score":0.04764688,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01496468750282019,"score_gpt":0.2600325487446614,"score_spread":0.2450678612418412,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}