{"id":"W2766666809","doi":"10.1128/jvi.01239-17","title":"Analysis of Epstein-Barr Virus Genomes and Expression Profiles in Gastric Adenocarcinoma","year":2017,"lang":"en","type":"article","venue":"Journal of Virology","topic":"Viral-associated cancers and disorders","field":"Medicine","cited_by":80,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"Government of Canada; Canadian Institutes of Health Research; Deutsches Krebsforschungszentrum","keywords":"Lytic cycle; Biology; Genome; Epstein–Barr virus; Nasopharyngeal carcinoma; Virus; Gene; BZLF1; Transcriptome; Genetics; Virus latency; Virology; Carcinogenesis; Herpesviridae; Viral replication; Gene expression; Viral disease","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002771206,0.00008105546,0.0005854658,0.0005369332,0.00005411366,0.00000941416,0.0001164662,0.0001146123,0.00008699555],"category_scores_gemma":[0.0001540206,0.00006094891,0.0001373929,0.000135427,0.0001149964,0.00008253557,0.0000390857,0.0001972857,6.942983e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004393042,"about_ca_system_score_gemma":0.00008009363,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009300061,"about_ca_topic_score_gemma":0.00007795096,"domain_scores_codex":[0.9991519,0.00005563677,0.0003896739,0.0001028868,0.0001487196,0.0001512162],"domain_scores_gemma":[0.9988843,0.00003934595,0.0007407435,0.0001806947,0.00007477684,0.00008010564],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000635567,0.00009276388,0.914722,0.00001889791,0.0003493401,0.00009893942,0.0002743088,0.00006924792,0.08054961,0.000009244154,0.0001651249,0.003014956],"study_design_scores_gemma":[0.002613444,0.0008698229,0.9922397,0.00003828467,0.0007426827,0.00004242217,0.0002338139,0.0002015847,0.002746292,0.0001101966,0.0001138605,0.00004785757],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9916705,0.007009832,0.0000239908,0.0007913023,0.00006594836,0.00006244137,0.000005362386,0.000001668117,0.0003689882],"genre_scores_gemma":[0.9981806,0.001413232,0.0001679777,0.0001297815,0.00005362876,0.000001380417,0.000001487946,0.000006321166,0.00004553538],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07780332,"threshold_uncertainty_score":0.2485425,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01628161014990353,"score_gpt":0.2878544212455176,"score_spread":0.2715728110956141,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}