{"id":"W2767668961","doi":"10.1080/15476286.2017.1403001","title":"Silent but deadly: IS200 promotes pathogenicity in <i>Salmonella</i> Typhimurium","year":2017,"lang":"en","type":"article","venue":"RNA Biology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Western University","funders":"Government of Canada","keywords":"Biology; Transposable element; Pathogenicity island; Transposase; Genetics; Salmonella; Context (archaeology); Gene; Insertion sequence; Transposition (logic); Horizontal gene transfer; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005640123,0.0002258776,0.0004298358,0.00001695292,0.0003074913,0.00004353945,0.0007560694,0.0003674774,0.0003065827],"category_scores_gemma":[0.0003497157,0.00009062768,0.0001354858,0.00007982477,0.0002463009,0.00008430399,0.0002615561,0.0002369991,0.0002029641],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003444358,"about_ca_system_score_gemma":0.00001377144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00189555,"about_ca_topic_score_gemma":0.001947913,"domain_scores_codex":[0.9980949,0.000279177,0.000370648,0.00056149,0.00006649456,0.0006272639],"domain_scores_gemma":[0.9990426,0.0002965113,0.0002461879,0.0002412988,0.00004765625,0.0001257583],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004581703,0.0000897724,0.3926923,0.000003297616,0.00001079626,0.00002155481,0.00002457282,6.52566e-7,0.5760719,0.000553811,0.0002571227,0.03022837],"study_design_scores_gemma":[0.0002886553,0.0003713871,0.9632167,0.00001484641,0.00001002658,0.00003008332,0.00005718753,0.00005239101,0.01411085,0.00674218,0.01477879,0.0003269233],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9921199,0.0005033556,0.000003735219,0.002991702,0.0004473418,0.000222589,0.0000652267,0.00006160003,0.003584545],"genre_scores_gemma":[0.9981722,0.0002367603,0.00006467856,0.000679911,0.0004628536,0.00002877557,0.00006675387,0.000001758514,0.0002863562],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5705244,"threshold_uncertainty_score":0.3695689,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03793303943431411,"score_gpt":0.2701585582410574,"score_spread":0.2322255188067433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}