{"id":"W2767668961","doi":"10.1080/15476286.2017.1403001","title":"Silent but deadly: IS200 promotes pathogenicity in <i>Salmonella</i> Typhimurium","year":2017,"lang":"en","type":"article","venue":"RNA Biology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University; Western University","funders":"Government of Canada","keywords":"Biology; Transposable element; Pathogenicity island; Transposase; Genetics; Salmonella; Context (archaeology); Gene; Insertion sequence; Transposition (logic); Horizontal gene transfer; Genome; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000188146,0.0002013533,0.0001508262,0.0001962876,0.0001009208,0.0003558685,0.0001410257,0.0001952244,0.001077164],"category_scores_gemma":[0.0001911661,0.000126802,0.0001628707,0.00006679336,0.0003063526,0.0000910978,0.0002005464,0.00032323,0.0003100685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002027368,"about_ca_system_score_gemma":0.0002298898,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008375488,"about_ca_topic_score_gemma":0.001633296,"domain_scores_codex":[0.9998493,0.00003683427,0.00001002962,0.00002093604,0.00004420805,0.00003868705],"domain_scores_gemma":[0.9995655,0.00009617917,0.0001128064,0.00003144642,0.00003641293,0.0001575365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001262417,0.00002720347,0.0006317532,0.00001556462,0.000002109078,0.0000572623,0.00001025751,0.00002792877,0.9986258,0.00004364765,0.00002805121,0.0004041875],"study_design_scores_gemma":[0.00003708429,0.002298381,0.06096577,0.00002582748,0.00002725515,0.000677369,0.0002782954,0.001317363,0.9313608,0.0002064039,0.002792301,0.00001311881],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983401,0.000424342,0.0003471427,0.00007631243,0.00001419988,0.000003009558,0.00005391971,0.00003498636,0.0007059553],"genre_scores_gemma":[0.9980252,0.0001459032,0.000467593,0.00006244171,0.000006904087,0.000004236522,0.0001456744,0.0000193923,0.001122602],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001077164,"threshold_uncertainty_score":0.003603518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03793303943431411,"score_gpt":0.2701585582410574,"score_spread":0.2322255188067433,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}