{"id":"W2768125890","doi":"10.1016/j.ijmm.2017.11.006","title":"Global spread of mouse-adapted Staphylococcus aureus lineages CC1, CC15, and CC88 among mouse breeding facilities","year":2017,"lang":"en","type":"article","venue":"International Journal of Medical Microbiology","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Bundesministerium für Bildung und Forschung; Deutsche Forschungsgemeinschaft","keywords":"Biology; Staphylococcus aureus; Microbiology; Virulence; Genotyping; Multilocus sequence typing; Superantigen; Typing; Host (biology); Staphylococcal infections; Host adaptation; Lineage (genetic); Virology; Gene; Genotype; Genetics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008159879,0.000255173,0.0007850293,0.0002229841,0.0001070758,0.00006954835,0.001173753,0.0004338226,0.0003184814],"category_scores_gemma":[0.003140066,0.0002034783,0.0002619378,0.00005072873,0.001717111,0.000206049,0.0003950966,0.0005626376,0.000006426118],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001722985,"about_ca_system_score_gemma":0.0003769555,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004748816,"about_ca_topic_score_gemma":0.0003121064,"domain_scores_codex":[0.9975606,0.00008590239,0.001077436,0.0002759476,0.0006620587,0.0003380911],"domain_scores_gemma":[0.9968852,0.0002379347,0.001189607,0.0003168556,0.001036529,0.0003338643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002489906,0.0005844607,0.2362853,0.0001921396,0.001768209,0.001249302,0.0004432897,0.00001716641,0.7250811,0.001319808,0.0167914,0.01377792],"study_design_scores_gemma":[0.04585965,0.005995099,0.3456564,0.007049165,0.0009902036,0.009359861,0.003781974,0.0006826163,0.4020379,0.001463371,0.1750454,0.002078455],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904746,0.0008107437,0.001054515,0.005451377,0.001084451,0.0001599575,0.0004204497,0.00001874547,0.0005251654],"genre_scores_gemma":[0.9962764,0.0008738084,0.00102197,0.0003720002,0.0006442331,0.000001938479,0.00002183891,0.00001849901,0.0007692767],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3230432,"threshold_uncertainty_score":0.8297605,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02010808569335603,"score_gpt":0.3125255769294789,"score_spread":0.2924174912361228,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}