{"id":"W2768618120","doi":"10.1038/ni.3873","title":"Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data","year":2017,"lang":"en","type":"article","venue":"Nature Immunology","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Agence Nationale de la Recherche","keywords":"Repertoire; Acquired immune system; Immune receptor; Immune system; Biology; Receptor; Computational biology; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch","open_science"],"consensus_categories":[],"category_scores_codex":[0.1068437,0.001494771,0.001424769,0.01004272,0.003660824,0.005909161,0.007265759,0.01193537,0.03841344],"category_scores_gemma":[0.2506863,0.001873619,0.00220087,0.005413528,0.001858729,0.008544654,0.01137623,0.009406616,0.03160807],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002091108,"about_ca_system_score_gemma":0.02118059,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01006605,"about_ca_topic_score_gemma":0.01968019,"domain_scores_codex":[0.9607409,0.01547382,0.0054733,0.003389665,0.01198233,0.002940064],"domain_scores_gemma":[0.6805282,0.06123176,0.01412386,0.05201268,0.1439075,0.04819606],"domain_codex":null,"domain_gemma":"reproducibility","domain_candidate":"reproducibility","domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008195945,0.0007750383,0.01060493,0.001010396,0.0002223065,0.0005552534,0.001357536,0.002314466,0.008395974,0.005465597,0.687468,0.2810109],"study_design_scores_gemma":[0.0008891635,0.0004759792,0.02006954,0.003412963,0.0003322213,0.000762969,0.002020521,0.01196338,0.006971568,0.04925443,0.9032835,0.0005637108],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.02239267,0.003032527,0.5116212,0.2590885,0.02152219,0.01317751,0.03131222,0.05109408,0.08675903],"genre_scores_gemma":[0.0633109,0.001663744,0.7960558,0.04926104,0.00548141,0.01078788,0.03288449,0.006676492,0.03387838],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9927343,"threshold_uncertainty_score":0.5650501,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05915398508908323,"score_gpt":0.308048742988094,"score_spread":0.2488947578990107,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}