{"id":"W2768618120","doi":"10.1038/ni.3873","title":"Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data","year":2017,"lang":"en","type":"article","venue":"Nature Immunology","topic":"T-cell and B-cell Immunology","field":"Immunology and Microbiology","cited_by":199,"is_retracted":false,"has_abstract":false,"ca_institutions":"Simon Fraser University","funders":"National Institute of Allergy and Infectious Diseases; Agence Nationale de la Recherche","keywords":"Repertoire; Acquired immune system; Immune receptor; Immune system; Biology; Receptor; Computational biology; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","open_science","research_integrity","insufficient_payload"],"consensus_categories":["research_integrity"],"category_scores_codex":[0.001969265,0.0008069909,0.001334947,0.0003428136,0.008030956,0.0001950355,0.007551482,0.003007126,0.0009804711],"category_scores_gemma":[0.002534945,0.0007654537,0.0004141102,0.0001884673,0.001830817,0.001066244,0.004612039,0.006135564,0.0006168057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004321092,"about_ca_system_score_gemma":0.0003695367,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003105361,"about_ca_topic_score_gemma":0.0005285509,"domain_scores_codex":[0.9947906,0.0009251249,0.001314963,0.001405597,0.00008811428,0.001475635],"domain_scores_gemma":[0.9885402,0.001038147,0.001350161,0.008486979,0.0005295333,0.00005492135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009554891,0.0003461419,0.0002478308,0.0000389402,0.001533757,0.00000942155,0.0009132472,0.000001600585,0.9538366,0.005156494,0.01100064,0.02595983],"study_design_scores_gemma":[0.00762865,0.001207874,0.001863336,0.0004313228,0.0003762694,0.0006155383,0.005208327,0.0001166044,0.4554533,0.0030938,0.5224431,0.001561835],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7825473,0.1293797,0.001451464,0.02878679,0.03503312,0.004308834,0.003567658,0.001662737,0.01326234],"genre_scores_gemma":[0.9771598,0.001250457,0.002298736,0.0005428168,0.0002129651,0.0002372237,0.006350331,0.0001361199,0.01181154],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5114425,"threshold_uncertainty_score":0.9999328,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05915398508908323,"score_gpt":0.308048742988094,"score_spread":0.2488947578990107,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}