{"id":"W2768939170","doi":"10.1186/s12864-017-4307-0","title":"Chromosome level assembly and secondary metabolite potential of the parasitic fungus Cordyceps militaris","year":2017,"lang":"en","type":"article","venue":"BMC Genomics","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":49,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Canadian Institutes of Health Research; Génome Québec","keywords":"Cordyceps militaris; Biology; Secondary metabolite; Fungus; Cordyceps; Metabolite; Chromosome; Genetics; Botany; Computational biology; Microbiology; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001182726,0.00008611488,0.0001971143,0.00001712477,0.0002814596,0.00001136347,0.0001756772,0.00009468394,0.00002892824],"category_scores_gemma":[0.0001022659,0.00006155991,0.00007904064,0.00001997209,0.0002703566,0.00003275592,0.00008173259,0.0001457474,0.0000156893],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001542037,"about_ca_system_score_gemma":0.0001566992,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008885111,"about_ca_topic_score_gemma":0.00006761136,"domain_scores_codex":[0.9994625,0.00002435459,0.0001645714,0.0001652893,0.00005415827,0.0001291325],"domain_scores_gemma":[0.9991326,0.00005221017,0.0001174495,0.0005945656,0.00004486047,0.0000582723],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001203498,0.00009332631,0.1176836,0.0001057829,0.0001046575,0.000003296529,0.0001775783,0.000005637684,0.8767797,0.00212397,0.0003729012,0.002429154],"study_design_scores_gemma":[0.0006380588,0.00004613359,0.9561089,0.000009625393,0.0001609065,0.0000500807,0.00006155284,0.00008724861,0.03922414,0.0005357984,0.003010672,0.00006693914],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962921,0.001363663,0.0001268318,0.0005326404,0.0002060159,0.0002546883,0.0001936383,0.000008000681,0.001022448],"genre_scores_gemma":[0.9970577,0.0000952088,0.001570928,0.0001940342,0.0001263619,0.00001167591,0.00001993605,0.000008759203,0.0009153525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8384252,"threshold_uncertainty_score":0.251034,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03422901314546652,"score_gpt":0.2806877524333354,"score_spread":0.2464587392878689,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}