{"id":"W2769021933","doi":"10.1007/s00299-017-2213-1","title":"Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations","year":2017,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Connaught Fund; Israel Science Foundation; Weizmann Institute of Science; Weizmann UK","keywords":"Biology; Retrotransposon; Genome; Genetics; Gene; Sine; Intron; Transposable element; In silico; Common wheat; Aegilops tauschii; Ploidy; Genome evolution; Chromosome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002369605,0.0001089415,0.0002960883,0.00002610214,0.0003022459,0.00005465821,0.00007117745,0.00008235183,0.00003136657],"category_scores_gemma":[0.000132494,0.00005432326,0.00006131062,0.0002028528,0.0000660019,0.00009663666,0.0000401511,0.00006894269,3.424461e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005844265,"about_ca_system_score_gemma":0.00002556668,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003557808,"about_ca_topic_score_gemma":0.02092663,"domain_scores_codex":[0.9989833,0.0000380534,0.0003703293,0.0002913867,0.0001457466,0.0001712014],"domain_scores_gemma":[0.9991557,0.0001111585,0.0004802442,0.00009916253,0.00007007999,0.0000836789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001357043,0.00006500178,0.7872314,0.000004883511,0.00008592966,0.00003142923,0.0002671381,0.00001214995,0.2118975,0.00001563099,0.000002311162,0.0003730335],"study_design_scores_gemma":[0.0001120856,0.00005628929,0.9857535,0.000009597814,0.0002023205,0.00001386989,0.00006936442,0.00007301385,0.01317091,0.0001194341,0.0003104356,0.0001092031],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970443,0.0002038695,0.000004258643,0.0004312603,0.00005430062,0.0001919514,0.001827856,0.000009135488,0.0002331034],"genre_scores_gemma":[0.9969678,0.0003319492,0.00003364523,0.00001112555,0.00003116616,0.000009787656,0.002498251,7.24182e-7,0.0001155352],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1987266,"threshold_uncertainty_score":0.9969389,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02404643158034077,"score_gpt":0.212009443458091,"score_spread":0.1879630118777502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}