{"id":"W2769021933","doi":"10.1007/s00299-017-2213-1","title":"Genome-wide analysis of a recently active retrotransposon, Au SINE, in wheat: content, distribution within subgenomes and chromosomes, and gene associations","year":2017,"lang":"en","type":"article","venue":"Plant Cell Reports","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":32,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Connaught Fund; Israel Science Foundation; Weizmann Institute of Science; Weizmann UK","keywords":"Biology; Retrotransposon; Genome; Genetics; Gene; Sine; Intron; Transposable element; In silico; Common wheat; Aegilops tauschii; Ploidy; Genome evolution; Chromosome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002641238,0.0002033789,0.0002752778,0.0007162596,0.0002271666,0.0003708673,0.0001142848,0.000223995,0.0007403179],"category_scores_gemma":[0.0003228481,0.0001084609,0.0004227724,0.001213636,0.0001147177,0.0001955447,0.0002628644,0.000243395,0.0002403966],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001239458,"about_ca_system_score_gemma":0.0001570698,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001327032,"about_ca_topic_score_gemma":0.003249475,"domain_scores_codex":[0.9998241,0.00001182837,0.00001907979,0.00008837141,0.00003709074,0.00001954543],"domain_scores_gemma":[0.9997736,0.00005368198,0.00006926304,0.00002189878,0.00004525212,0.00003632837],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005703981,0.00005691854,0.2557781,0.0009202452,0.0004601812,0.0005027899,0.0006712242,0.0005125083,0.7051693,0.0001880595,0.0006699052,0.0345004],"study_design_scores_gemma":[0.00001724762,0.0001324337,0.9752853,0.00003560577,0.0003752345,0.000800861,0.0001898389,0.001070785,0.01643675,0.000104406,0.005537998,0.00001358039],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9858608,0.002008636,0.002368637,0.00004247422,0.00001141219,0.00001762252,0.00905115,0.00005892302,0.0005802846],"genre_scores_gemma":[0.9742708,0.0009766237,0.003902377,0.00007479244,0.00001242275,0.00002024455,0.01999441,0.00003237847,0.0007159196],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001327032,"threshold_uncertainty_score":0.002638638,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02404643158034077,"score_gpt":0.212009443458091,"score_spread":0.1879630118777502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}