{"id":"W2770320324","doi":"10.7554/elife.29594","title":"The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism","year":2017,"lang":"en","type":"article","venue":"eLife","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Obligate; Genome; Microsporidia; Gene; Nuclear gene; Mitochondrial DNA; Intracellular parasite; Genetics; Parasitism; Clade; Comparative genomics; Phylogenetic tree; Phylogenetics; Parasite hosting; Obligate parasite; Evolutionary biology; Genomics; Host (biology); Microbiology; Ecology; Spore","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts","insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0004997269,0.0001901466,0.0002911668,0.00007570095,0.001500385,0.0001122468,0.0006148443,0.0001581189,0.0001053064],"category_scores_gemma":[0.0005218636,0.0001549822,0.00008958462,0.00007935679,0.0004747185,0.0001997604,0.00009955718,0.0002635554,0.0008187144],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003653455,"about_ca_system_score_gemma":0.00006947036,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006070518,"about_ca_topic_score_gemma":0.0001690968,"domain_scores_codex":[0.9986323,0.0001545901,0.0004245188,0.0002975294,0.00007075489,0.0004203212],"domain_scores_gemma":[0.9981408,0.0003183318,0.000324902,0.0008850801,0.0002535478,0.00007739155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0002756916,0.0004602587,0.01580883,0.00001514196,0.0005149328,0.0000615746,0.00217737,0.001098361,0.9282628,0.03679102,0.002909385,0.01162467],"study_design_scores_gemma":[0.001107326,0.0004740892,0.7390756,0.0000507454,0.0001023512,0.00007794523,0.0003123638,0.00005100424,0.1955957,0.001547548,0.06122215,0.0003831566],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937357,0.0006819424,0.001560954,0.0005485016,0.0009392592,0.0004031914,0.0001808228,0.00004476285,0.001904833],"genre_scores_gemma":[0.9973463,0.0004259182,0.0006989642,0.000253461,0.0001202565,0.00004211659,0.00006696879,0.00002273534,0.001023219],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7326671,"threshold_uncertainty_score":0.9999593,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0157597754321143,"score_gpt":0.2878787001663749,"score_spread":0.2721189247342606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}