{"id":"W2770320324","doi":"10.7554/elife.29594","title":"The genome of an intranuclear parasite, Paramicrosporidium saccamoebae, reveals alternative adaptations to obligate intracellular parasitism","year":2017,"lang":"en","type":"article","venue":"eLife","topic":"Parasitic Infections and Diagnostics","field":"Immunology and Microbiology","cited_by":93,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"Fonds de recherche du Québec – Nature et technologies; Natural Sciences and Engineering Research Council of Canada; National Science Foundation","keywords":"Biology; Obligate; Genome; Microsporidia; Gene; Nuclear gene; Mitochondrial DNA; Intracellular parasite; Genetics; Parasitism; Clade; Comparative genomics; Phylogenetic tree; Phylogenetics; Parasite hosting; Obligate parasite; Evolutionary biology; Genomics; Host (biology); Microbiology; Ecology; Spore","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005600154,0.0001501293,0.00009548027,0.000265518,0.0001294253,0.0001737415,0.0000861825,0.0002177077,0.0005608526],"category_scores_gemma":[0.0001988875,0.00007596632,0.0001292111,0.0002364181,0.0001092094,0.0001629367,0.0001858981,0.0002290887,0.000231652],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001178259,"about_ca_system_score_gemma":0.0001309712,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007101872,"about_ca_topic_score_gemma":0.001584281,"domain_scores_codex":[0.9999572,0.00000452737,0.000002462979,0.00001615895,0.000009669384,0.000009996018],"domain_scores_gemma":[0.9998832,0.00002920587,0.00003716506,0.00001351297,0.00001397364,0.00002290013],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000690487,0.000005226497,0.004184985,0.0000286644,0.000005096357,0.00007968449,0.00006278759,0.00002893309,0.9933736,0.00003645756,0.00002137326,0.002104197],"study_design_scores_gemma":[0.00001267164,0.0002750596,0.8425407,0.00002836812,0.00006987572,0.001949629,0.0005777527,0.0009574347,0.1473543,0.0002665413,0.005952538,0.00001512929],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9972528,0.0004165374,0.0008538104,0.00003809301,0.000003982981,0.00000469733,0.0009454696,0.00002030618,0.0004642138],"genre_scores_gemma":[0.9946971,0.0002954596,0.001722896,0.00004826628,0.000003590478,0.00000941422,0.002528504,0.00001236026,0.0006825455],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007101872,"threshold_uncertainty_score":0.001876235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0157597754321143,"score_gpt":0.2878787001663749,"score_spread":0.2721189247342606,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}