{"id":"W2770376967","doi":"10.1093/hmg/ddx390","title":"COPD GWAS variant at 19q13.2 in relation with DNA methylation and gene expression","year":2017,"lang":"en","type":"article","venue":"Human Molecular Genetics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Institut universitaire de cardiologie et de pneumologie de Québec; University of British Columbia","funders":"Nederlandse Organisatie voor Wetenschappelijk Onderzoek; Ministerie van Onderwijs, Cultuur en Wetenschap; Fonds Wetenschappelijk Onderzoek; Erasmus Medisch Centrum; ZonMw; Fonds de Recherche du Québec - Santé; Université Laval; Vlaamse regering; Universiteit Gent; European Commission; Canadian Institutes of Health Research; Cancer Research Society","keywords":"DNA methylation; Genome-wide association study; Epigenetics; Biology; COPD; Quantitative trait locus; Genetics; Expression quantitative trait loci; Epigenome; Genetic association; Methylation; Gene; Gene expression; Single-nucleotide polymorphism; Genotype; Internal medicine; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003640935,0.0003065305,0.0004954004,0.0005234962,0.0003898942,0.0003391855,0.0002628105,0.0004182816,0.002285763],"category_scores_gemma":[0.001010312,0.0001971102,0.0007098899,0.001106146,0.0001961078,0.00009464511,0.0002753447,0.0003726768,0.0001866583],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002257,"about_ca_system_score_gemma":0.000260486,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009695218,"about_ca_topic_score_gemma":0.01212001,"domain_scores_codex":[0.9995033,0.0001029726,0.00003934867,0.0002234094,0.00007017048,0.00006089724],"domain_scores_gemma":[0.999625,0.000113289,0.0001125042,0.00004691478,0.00004072973,0.00006156402],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001224237,0.00003709779,0.9622548,0.00007251069,0.001043701,0.0007739616,0.0001481324,0.0002272771,0.02832143,0.0001097907,0.0006668118,0.005120257],"study_design_scores_gemma":[0.00003560648,0.00007459999,0.9973791,0.00000548357,0.0002707351,0.0005975069,0.0000310035,0.0003189896,0.0007007753,0.00008744609,0.0004946227,0.000004116768],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963005,0.0008443001,0.0005679512,0.0001272383,0.00002329139,0.00001491939,0.001569455,0.00001996397,0.0005324241],"genre_scores_gemma":[0.9982798,0.0001231607,0.0004338947,0.00006271788,0.00002451822,0.00001585609,0.0006903709,0.00001207426,0.0003575618],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009695218,"threshold_uncertainty_score":0.01927757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01501546777206308,"score_gpt":0.2701686638948642,"score_spread":0.2551531961228011,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}