{"id":"W2771309885","doi":"10.1534/genetics.117.300481","title":"Keeping Pace with the Red Queen: Identifying the Genetic Basis of Susceptibility to Infectious Disease","year":2017,"lang":"en","type":"article","venue":"Genetics","topic":"Evolution and Genetic Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Epistasis; Genetics; Genotype; Genome-wide association study; Genome; Genetic association; Genetic variation; Evolutionary biology; Gene; Computational biology; Single-nucleotide polymorphism","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002562716,0.0001630259,0.0001274083,0.00002245908,0.0005324623,0.0000912547,0.0006269955,0.00007099263,0.00001144404],"category_scores_gemma":[0.0001845293,0.0001048045,0.00009446905,0.0000720269,0.0003222503,0.000002619096,0.0003549822,0.00009305051,0.000006597951],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001562872,"about_ca_system_score_gemma":0.0001096921,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00005609449,"about_ca_topic_score_gemma":0.001334812,"domain_scores_codex":[0.9988691,0.000104155,0.0002034034,0.0003442487,0.0002180113,0.0002611205],"domain_scores_gemma":[0.9977596,0.0000189921,0.0001876313,0.001720011,0.0001791915,0.0001345906],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003955489,0.0002130449,0.6367854,0.0001681244,0.0003472551,0.00001021758,0.0008116613,0.04386138,0.2957689,0.0002329464,0.008538656,0.01286684],"study_design_scores_gemma":[0.0004978846,0.0002896626,0.966,0.00002763953,0.0001160443,0.000008930853,0.0002299574,0.001104792,0.01920477,0.0002409265,0.0119916,0.0002877707],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.968684,0.0004803351,0.02681726,0.002922134,0.0001392012,0.0004287204,0.00002198365,0.00001041824,0.0004960151],"genre_scores_gemma":[0.9967176,0.0002456478,0.001835969,0.0004833829,0.0001581764,0.0000281232,0.00001118506,0.00002505055,0.000494837],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3292146,"threshold_uncertainty_score":0.4273803,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01062984748787034,"score_gpt":0.2666598822479335,"score_spread":0.2560300347600631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}