{"id":"W2772846116","doi":"10.3390/pathogens6040064","title":"Longitudinal Surveillance of Porcine Rotavirus B Strains from the United States and Canada and In Silico Identification of Antigenically Important Sites","year":2017,"lang":"en","type":"article","venue":"Pathogens","topic":"Viral gastroenteritis research and epidemiology","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Minnesota","keywords":"Antigenicity; Rotavirus; Virology; Biology; In silico; Antigen; Neutralization; Epitope; Amino acid; Peptide sequence; Genetics; Protein subunit; Virus; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005119382,0.00006869261,0.0002737561,0.00003304315,0.00005477041,0.000009114576,0.00009066812,0.00002840988,0.00001083404],"category_scores_gemma":[0.001165072,0.00004807176,0.00001947017,0.00003800932,0.0002449635,0.00002654002,0.00005848233,0.0000905757,9.018768e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001441185,"about_ca_system_score_gemma":0.00007635057,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.5903769,"about_ca_topic_score_gemma":0.8652956,"domain_scores_codex":[0.9990789,0.00008844859,0.0003871836,0.0001583496,0.0001229861,0.0001641259],"domain_scores_gemma":[0.9992322,0.00008282915,0.0002237882,0.0002918583,0.00009059501,0.00007874095],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001120728,0.00001881119,0.8164513,0.00002352384,0.00002261705,0.00004159092,0.00004296871,0.000003862308,0.1828719,0.000005505781,0.00006039368,0.0003454259],"study_design_scores_gemma":[0.0005021354,0.0001095036,0.996944,0.0000372876,0.0000097812,0.00001383682,0.00009860111,0.0009430186,0.001231358,0.00005140942,0.0000274951,0.00003155423],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973617,0.0004854973,0.00002056259,0.001216056,0.00001644913,0.0001456168,0.0007471435,0.000002131829,0.000004870845],"genre_scores_gemma":[0.9973598,0.002268281,0.00007921654,0.00006108421,0.00001874592,0.000003034291,0.0001958154,0.000004864142,0.000009165253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2749187,"threshold_uncertainty_score":0.4123509,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03373770438847958,"score_gpt":0.3100848797010593,"score_spread":0.2763471753125797,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}