{"id":"W2773999015","doi":"10.7554/elife.33383","title":"Plasmid-powered evolutionary transitions","year":2017,"lang":"en","type":"letter","venue":"eLife","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Plasmid; Virulence; Pathogen; Biology; Rhodococcus equi; Genetics; Strain (injury); Bacteria; Microbiology; Computational biology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001417642,0.0003749044,0.0003270604,0.0001416816,0.0009743854,0.001402665,0.0006114947,0.008298726,0.003771459],"category_scores_gemma":[0.005845756,0.0002222538,0.0003684753,0.000108706,0.001919047,0.001376509,0.001556995,0.009330128,0.002720029],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0011678,"about_ca_system_score_gemma":0.0005219392,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002478869,"about_ca_topic_score_gemma":0.0005714499,"domain_scores_codex":[0.9993764,0.0001578087,0.00003247737,0.00009330218,0.0001838316,0.000156205],"domain_scores_gemma":[0.9982213,0.001035042,0.0001400958,0.0002293098,0.0001465496,0.0002275899],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0008145602,0.000188579,0.002644239,0.0003074269,0.00009435866,0.01162102,0.0004923544,0.001365991,0.04001649,0.1920633,0.6108678,0.139524],"study_design_scores_gemma":[0.0004356109,0.0003782299,0.001873085,0.000115461,0.00003228125,0.005144209,0.000352233,0.002238946,0.01817076,0.1032359,0.8679641,0.00005925461],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"commentary","genre_scores_codex":[0.04908333,0.01913464,0.00647348,0.8385748,0.0379729,0.00007111991,0.0001983316,0.0004604742,0.04803104],"genre_scores_gemma":[0.4887078,0.01303939,0.002474922,0.431954,0.02632128,0.0002130363,0.000242075,0.0001354228,0.03691205],"genre_candidate":"commentary","genre_consensus":"commentary","teacher_disagreement_score":0.008298726,"threshold_uncertainty_score":0.01261675,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01101349044166456,"score_gpt":0.2357218671498135,"score_spread":0.224708376708149,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}