{"id":"W2774863689","doi":"10.1093/gbe/evx254","title":"Genomic Loss and Silencing on the Y Chromosomes of Rumex","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Genetic and Clinical Aspects of Sex Determination and Chromosomal Abnormalities","field":"Biochemistry, Genetics and Molecular Biology","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Tel Aviv University","keywords":"Biology; Gene silencing; Genetics; Epigenetics; Loss of heterozygosity; Gene; Chromosome; X-inactivation; Transcriptome; Gene expression; X chromosome; Allele","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001464588,0.00007945344,0.00009875213,0.000008766327,0.0003166972,0.00001467643,0.0001305408,0.0001088581,0.00001907191],"category_scores_gemma":[0.00006635956,0.0000541451,0.0000304628,0.000007620453,0.0005046887,0.000003090616,0.0001197601,0.00004941016,0.000004162561],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004294001,"about_ca_system_score_gemma":0.0000166456,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002347806,"about_ca_topic_score_gemma":0.00001022274,"domain_scores_codex":[0.9995203,0.00003466441,0.0001272038,0.0001754354,0.0000285562,0.0001138218],"domain_scores_gemma":[0.999587,0.00002049638,0.0001079187,0.0002230984,0.00002869241,0.00003279813],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001140966,0.00004264804,0.1839843,0.00003215095,0.00006488487,0.0000011231,0.0001518911,0.000003937986,0.7930548,0.0189333,0.00005986238,0.003557007],"study_design_scores_gemma":[0.0003011228,0.0005407753,0.9760504,0.000009828125,0.00001290521,0.00001525675,0.0002981443,0.00001799525,0.01686266,0.004172477,0.001612463,0.0001060142],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9969134,0.001277013,0.00005641899,0.0006179634,0.00007302645,0.00006922379,0.00001628335,0.000002960765,0.0009736688],"genre_scores_gemma":[0.9985613,0.0008355209,0.00003185116,0.0001334066,0.0001379428,0.000005605878,0.00001230188,0.00000383427,0.0002782469],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.792066,"threshold_uncertainty_score":0.2435811,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01308043040108283,"score_gpt":0.257711723948122,"score_spread":0.2446312935470391,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}