{"id":"W2778731662","doi":"10.1101/234096","title":"Parental legacy, demography, and introgression influenced the evolution of the two subgenomes of the tetraploid <i>Capsella bursa-pastoris</i> (Brassicaceae)","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Uppsala Multidisciplinary Center for Advanced Computational Science; Vetenskapsrådet","keywords":"Biology; Introgression; Selfing; Ploidy; Evolutionary biology; Outcrossing; Polyploid; Selection (genetic algorithm); Population; Genome; Genetics; Gene; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001835231,0.0002396992,0.0001799187,0.0005038055,0.0001954737,0.0004089747,0.0001724321,0.0002254542,0.0006137819],"category_scores_gemma":[0.0002331912,0.0001545846,0.000188798,0.0003991334,0.00022055,0.0002991916,0.0003081652,0.0002937694,0.0001337808],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002785978,"about_ca_system_score_gemma":0.0001034934,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001747179,"about_ca_topic_score_gemma":0.003125092,"domain_scores_codex":[0.9998901,0.00001583414,0.00000778624,0.00006025753,0.00001201033,0.00001397311],"domain_scores_gemma":[0.999806,0.00004497436,0.00007256566,0.00002185584,0.00002350476,0.00003111253],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000265832,0.00001899081,0.1597231,0.00006885666,0.00008516922,0.0002253788,0.000593259,0.000259455,0.8302643,0.0001799684,0.00004394764,0.008271649],"study_design_scores_gemma":[0.000003640703,0.00006491614,0.9911311,0.000006597846,0.00004442921,0.000219483,0.0002840931,0.0003749759,0.007079711,0.00006712188,0.0007143448,0.000009613257],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991678,0.0002696456,0.0001850031,0.000008074111,0.000001200535,0.000001580074,0.0001013482,0.000005239734,0.0002600839],"genre_scores_gemma":[0.9991156,0.0001849261,0.0001918943,0.00001683003,0.000001846236,0.000002788131,0.0002388953,0.000005220169,0.0002418949],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001747179,"threshold_uncertainty_score":0.003474057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006022833412124032,"score_gpt":0.2094455970264869,"score_spread":0.2034227636143629,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}