{"id":"W2778858779","doi":"10.1097/tp.0000000000002058","title":"Gene Expression Profiling of Bronchoalveolar Lavage Cells During Aspergillus Colonization of the Lung Allograft","year":2017,"lang":"en","type":"article","venue":"Transplantation","topic":"Transplantation: Methods and Outcomes","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Biology; Bronchoalveolar lavage; Aspergillus fumigatus; Gene expression profiling; Gene expression; Aspergillus; Gene; Colonization; Cytokine; Immunology; Microarray; Aspergillosis; Transcriptome; Immune system; Microbiology; Lung; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001271822,0.0001813446,0.0002766494,0.0004337185,0.00016249,0.0002803213,0.0001034718,0.0001895988,0.0006486965],"category_scores_gemma":[0.0001780304,0.00007248864,0.0001921822,0.0004547238,0.0001554056,0.0001058541,0.0001527456,0.0002474097,0.0003248159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001330792,"about_ca_system_score_gemma":0.0001505014,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000361332,"about_ca_topic_score_gemma":0.000550023,"domain_scores_codex":[0.9998579,0.00001575422,0.000008581071,0.00004149022,0.00004045519,0.00003581227],"domain_scores_gemma":[0.9998969,0.00002488375,0.00002193076,0.000006137511,0.00002564173,0.000024547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003783698,0.00003141415,0.01577735,0.00005541837,0.00001577477,0.00009899774,0.0000881615,0.00004427364,0.9809648,0.00002066996,0.00007158981,0.002453143],"study_design_scores_gemma":[0.00002996025,0.0008705776,0.6159322,0.00002908204,0.0001282122,0.0009507206,0.0006363086,0.001734405,0.3768737,0.0001540195,0.002641581,0.00001906108],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9957185,0.00107963,0.001262131,0.00004196745,0.0000129877,0.00002033074,0.001377241,0.00002470214,0.0004625716],"genre_scores_gemma":[0.9927791,0.0009192494,0.002038655,0.00009322986,0.00001998007,0.0000913644,0.003133721,0.00001278821,0.0009119321],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006486965,"threshold_uncertainty_score":0.002170146,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562089602392009,"score_gpt":0.2947372807285346,"score_spread":0.2791163847046145,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}