{"id":"W2778858779","doi":"10.1097/tp.0000000000002058","title":"Gene Expression Profiling of Bronchoalveolar Lavage Cells During Aspergillus Colonization of the Lung Allograft","year":2017,"lang":"en","type":"article","venue":"Transplantation","topic":"Transplantation: Methods and Outcomes","field":"Medicine","cited_by":23,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Heart, Lung, and Blood Institute","keywords":"Biology; Bronchoalveolar lavage; Aspergillus fumigatus; Gene expression profiling; Gene expression; Aspergillus; Gene; Colonization; Cytokine; Immunology; Microarray; Aspergillosis; Transcriptome; Immune system; Microbiology; Lung; Medicine; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002088744,0.0001145742,0.0002392295,0.00006232654,0.0002294296,0.00001282665,0.000156207,0.00009428155,0.00002749517],"category_scores_gemma":[0.00002493841,0.00008272615,0.0001144449,0.00005717608,0.00009062577,0.0001651368,0.000009527528,0.0001076484,0.000001089054],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001938387,"about_ca_system_score_gemma":0.00004520269,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006501488,"about_ca_topic_score_gemma":0.00002102713,"domain_scores_codex":[0.9989889,0.00007948007,0.0003519841,0.0001694628,0.0002814438,0.0001287876],"domain_scores_gemma":[0.9991102,0.00006196835,0.0003246748,0.0003613051,0.0001020017,0.0000398463],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003783472,0.00003761527,0.1905523,0.001090601,0.00002962775,0.000008495933,0.001201855,0.0001955897,0.8063039,0.00005929122,0.000002518189,0.0001398487],"study_design_scores_gemma":[0.001216854,0.00002542215,0.4299413,0.0002819404,0.0001770135,0.00001264162,0.00002689269,0.0001035953,0.5681531,0.00001280463,0.000002323995,0.00004607406],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9850826,0.0001253204,0.0135238,0.00009794089,0.0002434266,0.0004801185,0.00006849674,0.00002329328,0.0003549691],"genre_scores_gemma":[0.9766912,0.0004774886,0.02255254,0.00001791321,0.00004825358,0.000009242387,0.00006350824,0.00001713698,0.0001226695],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.239389,"threshold_uncertainty_score":0.3373474,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01562089602392009,"score_gpt":0.2947372807285346,"score_spread":0.2791163847046145,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}