{"id":"W2780361501","doi":"10.1371/journal.pone.0189999","title":"HIV-1 envelope sequence-based diversity measures for identifying recent infections","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Centre Hospitalier de l’Université de Montréal; McGill University; Institut National de Santé Publique du Québec; Université de Montréal","funders":"Université de Montréal; Islamic Development Bank; Fonds de Recherche du Québec - Santé; Genome Canada; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Interquartile range; Receiver operating characteristic; Biology; Human immunodeficiency virus (HIV); Haplotype; Sequence analysis; Genetics; Medicine; Internal medicine; Virology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005306396,0.0006512577,0.0007501302,0.004222748,0.0003816172,0.001272182,0.0003531047,0.0006723951,0.0006174625],"category_scores_gemma":[0.009398622,0.0002168451,0.0007117948,0.001906154,0.0003969568,0.001175422,0.0009105114,0.0007289984,0.0002664446],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004014818,"about_ca_system_score_gemma":0.0002545364,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007955157,"about_ca_topic_score_gemma":0.001149872,"domain_scores_codex":[0.9977992,0.0008828127,0.0002178556,0.0003071697,0.0006502555,0.0001426262],"domain_scores_gemma":[0.9932509,0.003730698,0.001564482,0.0003284632,0.0008910939,0.0002343164],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008344185,0.0002049114,0.839341,0.0003793927,0.000798451,0.0001552874,0.0005574987,0.01828906,0.02856961,0.0008550787,0.0007990431,0.1092161],"study_design_scores_gemma":[0.0000482387,0.001596936,0.7747785,0.0002011087,0.0003398332,0.00147851,0.0005989762,0.1864069,0.02708986,0.003981229,0.003261396,0.0002186902],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.95669,0.003624055,0.03569122,0.0001065948,0.00003990291,0.0001012198,0.00136715,0.000239075,0.002140787],"genre_scores_gemma":[0.9799972,0.0004410527,0.01836562,0.00004079862,0.00003472581,0.00006334026,0.0008298068,0.00001365853,0.0002138223],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.005306396,"threshold_uncertainty_score":0.02806324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2323258004459473,"score_gpt":0.3215532899784016,"score_spread":0.08922748953245427,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}