{"id":"W2780507191","doi":"10.3390/ijms19010078","title":"Identification of Host Defense-Related Proteins Using Label-Free Quantitative Proteomic Analysis of Milk Whey from Cows with Staphylococcus aureus Subclinical Mastitis","year":2017,"lang":"en","type":"article","venue":"International Journal of Molecular Sciences","topic":"Milk Quality and Mastitis in Dairy Cows","field":"Agricultural and Biological Sciences","cited_by":40,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Scheme for Promotion of Academic and Research Collaboration; Hospital for Sick Children","keywords":"Mastitis; Staphylococcus aureus; Subclinical infection; Biology; Proteomics; Pathogen; Microbiology; In silico; Immunology; Bacteria; Genetics; Virology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003013211,0.0002533138,0.0002737091,0.0005297996,0.0001959249,0.000352757,0.0001351713,0.0002692293,0.0003377726],"category_scores_gemma":[0.0003295703,0.00009987105,0.0002635366,0.0004032572,0.0001552482,0.0001640862,0.0002102859,0.0002465533,0.0001462186],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000150747,"about_ca_system_score_gemma":0.000114359,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004756369,"about_ca_topic_score_gemma":0.0004915218,"domain_scores_codex":[0.9998391,0.00002143586,0.00001425151,0.00003840265,0.00005828461,0.00002848573],"domain_scores_gemma":[0.9998679,0.00003308484,0.00004664767,0.000009552507,0.00002683122,0.00001605985],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001683181,0.00001881104,0.003002423,0.00006157764,0.00001632778,0.00005749298,0.00004530031,0.00005380145,0.9948697,0.00001421431,0.00003466055,0.001657358],"study_design_scores_gemma":[0.00002896975,0.0005881798,0.318863,0.00004149294,0.0001779341,0.001491942,0.0004171653,0.006756002,0.6688463,0.0001937727,0.002564939,0.00003034797],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9942805,0.0009343094,0.003533469,0.00005226767,0.00001139589,0.00001637599,0.0009204442,0.00003256202,0.0002188194],"genre_scores_gemma":[0.9840369,0.0008035691,0.01135706,0.0001333835,0.00001435324,0.00004836741,0.002979355,0.00002285501,0.0006043696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005297996,"threshold_uncertainty_score":0.00159353,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05176397674727892,"score_gpt":0.3238942623687274,"score_spread":0.2721302856214485,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}