{"id":"W2780728213","doi":"10.1038/s41588-018-0262-1","title":"Comparative genomics of the major parasitic worms","year":2018,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":610,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children; Canada Research Chairs; University of Calgary; McGill University","funders":"National Institute of General Medical Sciences; Biologické Centrum, Akademie Věd České Republiky; Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; National Institutes of Health; National Human Genome Research Institute; Wellcome Trust; Universitas Indonesia; Rural and Environment Science and Analytical Services Division; Scottish Government; University of Toronto; European Molecular Biology Laboratory; European Bioinformatics Institute; Compute Canada; James Hutton Institute","keywords":"Biology; Genomics; Genome; Comparative genomics; Gene family; In silico; Phylogenetics; Gene; Parasitism; Host (biology); Evolutionary biology; Genetics; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001476522,0.0002482083,0.0003023311,0.0008928457,0.0003461998,0.0004175205,0.0001960441,0.0003117292,0.00132284],"category_scores_gemma":[0.0002580357,0.0001134908,0.0003200199,0.001228201,0.000168785,0.0003005948,0.0003286529,0.0003436101,0.0003882828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002749132,"about_ca_system_score_gemma":0.0002666377,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001917793,"about_ca_topic_score_gemma":0.002001835,"domain_scores_codex":[0.9998819,0.00001543341,0.000006077509,0.00003971963,0.00003074011,0.0000261952],"domain_scores_gemma":[0.9998061,0.00004570231,0.00004869552,0.00001686973,0.00003401979,0.00004867249],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003979347,0.00005354079,0.00827151,0.0002726982,0.00005972764,0.0002449226,0.0002991807,0.000648169,0.9636581,0.000811161,0.0003903293,0.02489279],"study_design_scores_gemma":[0.00003486148,0.0008523964,0.8588329,0.00009571619,0.0002463324,0.002407548,0.0008390615,0.003634918,0.08932561,0.002048486,0.04163095,0.00005134926],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9794661,0.003637227,0.003229343,0.0001956604,0.00001594374,0.00002623491,0.008093601,0.00008842646,0.00524738],"genre_scores_gemma":[0.9571862,0.003918634,0.009016744,0.0001834445,0.0000247492,0.00004263705,0.02647051,0.00006900351,0.003088152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001917793,"threshold_uncertainty_score":0.004425347,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358097402061264,"score_gpt":0.3273898508689441,"score_spread":0.3138088768483315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}