{"id":"W2780728213","doi":"10.1038/s41588-018-0262-1","title":"Comparative genomics of the major parasitic worms","year":2018,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Parasite Biology and Host Interactions","field":"Environmental Science","cited_by":610,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; SickKids Foundation; Hospital for Sick Children; Canada Research Chairs; University of Calgary; McGill University","funders":"National Institute of General Medical Sciences; Biologické Centrum, Akademie Věd České Republiky; Biotechnology and Biological Sciences Research Council; National Institute of Allergy and Infectious Diseases; Medical Research Council; Natural Sciences and Engineering Research Council of Canada; Directorate for Biological Sciences; National Institutes of Health; National Human Genome Research Institute; Wellcome Trust; Universitas Indonesia; Rural and Environment Science and Analytical Services Division; Scottish Government; University of Toronto; European Molecular Biology Laboratory; European Bioinformatics Institute; Compute Canada; James Hutton Institute","keywords":"Biology; Genomics; Genome; Comparative genomics; Gene family; In silico; Phylogenetics; Gene; Parasitism; Host (biology); Evolutionary biology; Genetics; Computational biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00004812981,0.000065484,0.00007919264,0.000009074487,0.0001191015,0.000004183056,0.0002433292,0.0001455438,0.0006356108],"category_scores_gemma":[0.00001168649,0.00004190975,0.00003963064,0.000115787,0.0004363141,0.00002004665,0.00006734908,0.0002316349,0.0003989733],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004247804,"about_ca_system_score_gemma":0.00001006039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009568636,"about_ca_topic_score_gemma":0.0002232652,"domain_scores_codex":[0.9995583,0.00002943333,0.00009643511,0.0001187183,0.0000828005,0.000114359],"domain_scores_gemma":[0.9996518,0.00002939756,0.00005937447,0.0002184864,0.0000138234,0.00002706086],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00005244324,0.0001223228,0.7845026,0.000002552761,0.00006265343,7.889504e-7,0.001692518,0.000167545,0.2012894,0.0002221014,0.0102744,0.001610675],"study_design_scores_gemma":[0.00007301517,0.00005384663,0.7923346,0.000002923988,0.00001739218,0.000006782891,0.00003778708,0.0001314522,0.1649955,0.0004579824,0.04183099,0.00005774662],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9777057,0.0001586129,0.0000590795,0.0001448261,0.0004996862,0.00009426403,0.00001348361,0.000006068031,0.0213183],"genre_scores_gemma":[0.9973036,0.00000874235,0.001005958,0.0004810294,0.00009394201,0.000002306042,0.000002073259,0.000003292998,0.001099068],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03629389,"threshold_uncertainty_score":0.6959493,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01358097402061264,"score_gpt":0.3273898508689441,"score_spread":0.3138088768483315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}