{"id":"W2780843159","doi":"10.1016/j.celrep.2017.11.086","title":"Citrobacter rodentium Relies on Commensals for Colonization of the Colonic Mucosa","year":2017,"lang":"en","type":"article","venue":"Cell Reports","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":56,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"European Research Council; Wellcome Trust; Medical Research Council; Canadian Institute for Advanced Research; Leona M. and Harry B. Helmsley Charitable Trust; Bill and Melinda Gates Foundation; Howard Hughes Medical Institute","keywords":"Citrobacter rodentium; Commensalism; Microbiology; Biology; Virulence; Dysbiosis; Intestinal mucosa; Pathogen; Citrobacter; Colonization; Immunology; Enterobacteriaceae; Gut flora; Bacteria; Medicine; Escherichia coli; Internal medicine","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001395746,0.0003446542,0.0002428174,0.0001577335,0.0001234276,0.0003387603,0.0001595919,0.0002599958,0.0005647735],"category_scores_gemma":[0.0001600569,0.0001496815,0.0001635093,0.00008879343,0.0002529723,0.000263402,0.0002719292,0.0005338836,0.0002152948],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002457068,"about_ca_system_score_gemma":0.0002007414,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004996443,"about_ca_topic_score_gemma":0.000895978,"domain_scores_codex":[0.9997738,0.00003724938,0.00001772798,0.0000486985,0.00004365955,0.00007887107],"domain_scores_gemma":[0.9997999,0.00002752301,0.00004831273,0.00003120203,0.00002549099,0.00006764196],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00007550597,0.00001242561,0.0003926575,0.0000127817,7.755046e-7,0.00003104388,0.00000753392,0.0000100821,0.9990753,0.00002139789,0.00000627768,0.0003541421],"study_design_scores_gemma":[0.00001650136,0.001085595,0.0355519,0.0000132847,0.00001263932,0.0006308693,0.0001159617,0.0003771298,0.961028,0.00007285563,0.001084652,0.0000105576],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971961,0.0008561154,0.0007422728,0.00008181397,0.0000103415,0.00001305163,0.0001143845,0.00003339512,0.0009525197],"genre_scores_gemma":[0.9978086,0.0003339536,0.001074911,0.00005353775,0.000004811157,0.00001463571,0.0001354441,0.00001035763,0.0005638088],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0005647735,"threshold_uncertainty_score":0.001889408,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01705383547486311,"score_gpt":0.2897722849816284,"score_spread":0.2727184495067653,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}