{"id":"W2781706026","doi":"10.1016/j.ygeno.2017.12.006","title":"DMRFusion: A differentially methylated region detection tool based on the ranked fusion method","year":2018,"lang":"en","type":"article","venue":"Genomics","topic":"Epigenetics and DNA Methylation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":16,"is_retracted":false,"has_abstract":false,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; BC Cancer Agency","funders":"Division of Materials Research; Rose Ella Burkhardt Brain Tumor and Neuro-Oncology Center, Cleveland Clinic","keywords":"Biology; DNA methylation; Differentially methylated regions; Methylation; CpG site; Epigenetics; Bisulfite sequencing; Computational biology; Illumina Methylation Assay; Genetics; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003044694,0.001469861,0.001437187,0.00511651,0.0008759004,0.001373439,0.002656535,0.001893836,0.01362983],"category_scores_gemma":[0.00664969,0.0009010629,0.001992501,0.002363866,0.0004690237,0.001275716,0.002443857,0.001540995,0.004632165],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006573052,"about_ca_system_score_gemma":0.001162678,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002113344,"about_ca_topic_score_gemma":0.003160375,"domain_scores_codex":[0.9980345,0.0003375518,0.0001286925,0.0004588209,0.0008100644,0.0002303205],"domain_scores_gemma":[0.9980546,0.001193679,0.000223199,0.0002001791,0.0002238605,0.0001044511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.003116078,0.0003138521,0.01548597,0.001844247,0.001280383,0.0008596476,0.000415236,0.01689128,0.2544841,0.01327726,0.05102437,0.6410077],"study_design_scores_gemma":[0.0007165989,0.0006316917,0.01540874,0.0001560909,0.0005193073,0.002434513,0.000160533,0.4729333,0.4220619,0.02393908,0.06059567,0.0004425233],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.03963355,0.001122679,0.8659627,0.0001920287,0.0001176175,0.0002072605,0.0119395,0.07858054,0.00224428],"genre_scores_gemma":[0.1363417,0.0002947433,0.8408121,0.0002344674,0.00005227416,0.0004720663,0.01500295,0.003992438,0.002797271],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.01362983,"threshold_uncertainty_score":0.0455963,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0155550020039549,"score_gpt":0.2547812595504,"score_spread":0.2392262575464451,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}