{"id":"W2781719734","doi":"10.1016/j.ygeno.2018.01.001","title":"Investigation of putative invasion determinants of Actinobacillus species using comparative genomics","year":2018,"lang":"en","type":"article","venue":"Genomics","topic":"Microbial infections and disease research","field":"Immunology and Microbiology","cited_by":5,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Guelph","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Microbiology; Actinobacillus; Virulence; Pathogen; Comparative genomics; Genome; Commensalism; Human pathogen; Gene; Genomics; Virology; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001860705,0.0001082875,0.0002841151,0.0001463554,0.000150348,0.000007413932,0.0001182494,0.0001165012,0.0001771962],"category_scores_gemma":[0.00003785146,0.0001041045,0.00006780079,0.0001621482,0.0008578557,0.0000765233,0.0001150997,0.00009942779,0.00007455061],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001130336,"about_ca_system_score_gemma":0.0002620314,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002360073,"about_ca_topic_score_gemma":0.00007739926,"domain_scores_codex":[0.9991403,0.0001359929,0.0003367621,0.0001701902,0.00002661039,0.0001901643],"domain_scores_gemma":[0.9991621,0.00008411188,0.0002622106,0.0001769195,0.0002887984,0.00002581882],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001410012,0.00003110456,0.006260113,0.00002654864,0.00006457637,4.436904e-7,0.003169199,0.00003956633,0.9896874,0.0001185269,0.00008728354,0.000374199],"study_design_scores_gemma":[0.0004360793,0.0001910001,0.006837517,0.00002018811,0.00003152948,0.00001691643,0.001061542,0.0001552332,0.9901223,0.00023876,0.0007935769,0.00009541932],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983327,0.0002244827,0.0003970376,0.000006893233,0.0002201617,0.0002129379,0.000188856,0.000008705667,0.0004081759],"genre_scores_gemma":[0.9989903,0.00005500459,0.000702666,0.00001402553,0.00003767098,0.000002016225,0.00005209808,0.0000084201,0.0001378214],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002107656,"threshold_uncertainty_score":0.4245258,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.133489231743003,"score_gpt":0.3324990787324186,"score_spread":0.1990098469894157,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}