{"id":"W2781928155","doi":"10.1128/genomea.01420-17","title":"Draft Genome Sequence of <i>Rhodococcus</i> sp. Strain NCIMB 12038, a Naphthalene-Degrading Bacterium","year":2018,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Microbial Metabolic Engineering and Bioproduction","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Queen's University; Queen's University Belfast; Commonwealth Scholarship Commission","keywords":"Whole genome sequencing; Strain (injury); Bacteria; Naphthalene; Biology; Rhodococcus; Biotransformation; Genome; Microbiology; Sequence (biology); Gene; Genetics; Chemistry; Biochemistry; Organic chemistry","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003228182,0.0002235695,0.0002143814,0.0000787715,0.00009329436,0.00002419168,0.0002854959,0.0001204762,0.00009039032],"category_scores_gemma":[0.0000348033,0.0002211462,0.00008951743,0.0002005394,0.0001507656,0.0000108829,0.0001147921,0.00007909339,0.00004597918],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000313873,"about_ca_system_score_gemma":0.00007199806,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003005023,"about_ca_topic_score_gemma":0.000006679382,"domain_scores_codex":[0.99859,0.00003857617,0.0003339237,0.0004795319,0.0001679944,0.0003899813],"domain_scores_gemma":[0.9990917,0.000001502918,0.0001421591,0.0004782889,0.0001986544,0.00008765607],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004407417,0.00005159045,0.0003709446,0.00005026249,0.00007617434,0.000001784834,0.0001335863,0.00003086891,0.9984428,0.00001292936,0.0002056565,0.0005793783],"study_design_scores_gemma":[0.0004868963,0.0006048282,0.003738149,0.00003024625,0.00003267094,0.00004052393,0.00006376681,0.000009400724,0.5062762,0.00001814095,0.4883213,0.0003778651],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.995059,0.0006843287,0.001500778,0.00006545569,0.0007271973,0.0002583032,0.0008114804,0.000026402,0.0008670687],"genre_scores_gemma":[0.9941002,0.0002709714,0.001543991,0.0001621159,0.001192951,0.00001577637,0.0009560335,0.0000307824,0.00172714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4921665,"threshold_uncertainty_score":0.901808,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01908757650851291,"score_gpt":0.256476036344752,"score_spread":0.237388459836239,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}