{"id":"W2782970605","doi":"10.1093/gbe/evy005","title":"Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random","year":2018,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft; University of Guelph","keywords":"Biology; DNA; Gene; Genetics; Circular bacterial chromosome; Plasmid; Chromatin; Horizontal gene transfer; Genome; genomic DNA; DNA sequencing; Molecular biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001080855,0.00007975352,0.00011066,0.00001758544,0.0001474553,0.000007370316,0.00005980916,0.00007155985,0.00135425],"category_scores_gemma":[0.00000503742,0.00006675575,0.00004159626,0.00005965292,0.0003677985,0.0001058472,0.00005410681,0.00004776231,0.0002015816],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005357174,"about_ca_system_score_gemma":0.00000400124,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004328877,"about_ca_topic_score_gemma":0.0002708713,"domain_scores_codex":[0.9994117,0.000042225,0.0001576195,0.0001932821,0.00002718231,0.0001680161],"domain_scores_gemma":[0.9997984,0.00001314544,0.00002831966,0.0001042725,0.000009582319,0.00004633554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009511117,0.00002510273,0.02745517,0.000003122575,0.00001460024,1.852554e-7,0.0008790726,0.000001010284,0.9687753,0.00004142452,0.00005524289,0.002654663],"study_design_scores_gemma":[0.0004705495,0.0001359518,0.8058439,0.000004122379,0.00002356358,0.000009220805,0.00004354472,0.00004363839,0.1854983,0.0003568019,0.007473678,0.00009678641],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945402,0.00008569876,0.00457034,0.0003087497,0.000169211,0.00008979374,0.0000242107,0.00001211331,0.0001996412],"genre_scores_gemma":[0.9991639,0.0000646509,0.0003145592,0.0002289375,0.00006995939,0.000005834506,0.00001208463,0.000004532498,0.0001355932],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.783277,"threshold_uncertainty_score":0.9995586,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01058877367563315,"score_gpt":0.2348999486807413,"score_spread":0.2243111750051082,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}