{"id":"W2782970605","doi":"10.1093/gbe/evy005","title":"Packaging of Dinoroseobacter shibae DNA into Gene Transfer Agent Particles Is Not Random","year":2018,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":58,"is_retracted":false,"has_abstract":true,"ca_institutions":"Memorial University of Newfoundland","funders":"Natural Sciences and Engineering Research Council of Canada; Deutsche Forschungsgemeinschaft; University of Guelph","keywords":"Biology; DNA; Gene; Genetics; Circular bacterial chromosome; Plasmid; Chromatin; Horizontal gene transfer; Genome; genomic DNA; DNA sequencing; Molecular biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002822479,0.0002357705,0.0002222432,0.0002299009,0.0001422986,0.0003955522,0.0001938487,0.0002875282,0.0008085684],"category_scores_gemma":[0.0004287404,0.0002958172,0.0002681983,0.0001753566,0.0002118312,0.0002356893,0.0003147097,0.0003834177,0.0005769773],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002062816,"about_ca_system_score_gemma":0.0001481272,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003091811,"about_ca_topic_score_gemma":0.0004077997,"domain_scores_codex":[0.9997063,0.00004395359,0.00002700158,0.00008778917,0.00008733515,0.00004750481],"domain_scores_gemma":[0.9996412,0.00006880982,0.0001058679,0.00007946995,0.00005528645,0.0000494179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002483128,0.000007441424,0.0009455117,0.00002201799,0.00000421426,0.00001864711,0.00001985338,0.00002186389,0.9978989,0.00006265724,0.00001061635,0.0009634351],"study_design_scores_gemma":[0.00001401046,0.0003070206,0.01994372,0.00001469075,0.00003136006,0.0003461303,0.00007143139,0.001053764,0.9755846,0.0001803864,0.002443014,0.00000985558],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9887631,0.0004384938,0.009536535,0.00007139574,0.00002474683,0.00003981491,0.0001026073,0.0001213865,0.0009019353],"genre_scores_gemma":[0.991805,0.0002678486,0.005523806,0.00006437323,0.000006851216,0.00002169707,0.0004824239,0.00004730524,0.001780718],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008085684,"threshold_uncertainty_score":0.002704918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01058877367563315,"score_gpt":0.2348999486807413,"score_spread":0.2243111750051082,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}